Evidence map›Paper›PMID 27739449›Full record

ArticleScientific reports2016

Lipidomic Profiling of Lung Pleural Effusion Identifies Unique Metabotype for EGFR Mutants in Non-Small Cell Lung Cancer.

Ying Swan Ho, Lian Yee Yip, Nurhidayah Basri, Vivian Su Hui Chong, Chin Chye Teo, Eddy Tan, Kah Ling Lim, Gek San Tan, Xulei Yang, Si Yong Yeo and 6 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 20 citations in OpenAlex.

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  8. Metabolic signatures of four major histological types of lung cancer cells.Metabolomics : Official journal of the Metabolomic Society · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 1 country.

Ying Swan HoBioprocessing Technology Institute Agency for Science, Technology and Research (A*STAR), 20 Biopolis Way, #06-01 Centros, Singapore 138668, Singapore.
Lian Yee YipBioprocessing Technology Institute Agency for Science, Technology and Research (A*STAR), 20 Biopolis Way, #06-01 Centros, Singapore 138668, Singapore.
Nurhidayah BasriBioprocessing Technology Institute Agency for Science, Technology and Research (A*STAR), 20 Biopolis Way, #06-01 Centros, Singapore 138668, Singapore.
Vivian Su Hui ChongBioprocessing Technology Institute Agency for Science, Technology and Research (A*STAR), 20 Biopolis Way, #06-01 Centros, Singapore 138668, Singapore.
Chin Chye TeoBioprocessing Technology Institute Agency for Science, Technology and Research (A*STAR), 20 Biopolis Way, #06-01 Centros, Singapore 138668, Singapore.
Eddy TanBioprocessing Technology Institute Agency for Science, Technology and Research (A*STAR), 20 Biopolis Way, #06-01 Centros, Singapore 138668, Singapore.
Kah Ling LimDepartment of Pathology Singapore General Hospital 20 College Road, Academia, Level 10, Singapore 169856, Singapore.
Gek San TanDepartment of Pathology Singapore General Hospital 20 College Road, Academia, Level 10, Singapore 169856, Singapore.
Xulei YangInstitute of High Performance Computing, Agency for Science, Technology and Research (A*STAR), 1 Fusionopolis way, #16-16 Connexis, Singapore 138632, Singapore.
Si Yong YeoInstitute of High Performance Computing, Agency for Science, Technology and Research (A*STAR), 1 Fusionopolis way, #16-16 Connexis, Singapore 138632, Singapore.
Mariko Si Yue KohDepartment of Respiratory and Critical Care Medicine, Singapore General Hospital, Outram Rd, Singapore 169608.
Anantham DevanandDepartment of Respiratory and Critical Care Medicine, Singapore General Hospital, Outram Rd, Singapore 169608.
Angela TakanoDepartment of Respiratory and Critical Care Medicine, Singapore General Hospital, Outram Rd, Singapore 169608.
Eng Huat TanNational Cancer Centre, 11 Hospital Drive, Singapore 169610, Singapore.
Daniel Shao Weng TanNational Cancer Centre, 11 Hospital Drive, Singapore 169610, Singapore.
Tony Kiat Hon LimDepartment of Pathology Singapore General Hospital 20 College Road, Academia, Level 10, Singapore 169856, Singapore.
Singapore General Hospital · SGAgency for Science, Technology and Research · SGBioprocessing Technology Institute · SGNational Cancer Centre Singapore · SGGenome Institute of Singapore · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cytology and histology forms the cornerstone for the diagnosis of non-small cell lung cancer (NSCLC) but obtaining sufficient tumour cells or tissue biopsies for these tests remains a challenge. We investigate the lipidome of lung pleural effusion (PE) for unique metabolic signatures to discriminate benign versus malignant PE and EGFR versus non-EGFR malignant subgroups to identify novel diagnostic markers that is independent of tumour cell availability. Using liquid chromatography mass spectrometry, we profiled the lipidomes of the PE of 30 benign and 41 malignant cases with or without EGFR mutation. Unsupervised principal component analysis revealed distinctive differences between the lipidomes of benign and malignant PE as well as between EGFR mutants and non-EGFR mutants. Docosapentaenoic acid and Docosahexaenoic acid gave superior sensitivity and specificity for detecting NSCLC when used singly. Additionally, several 20- and 22- carbon polyunsaturated fatty acids and phospholipid species were significantly elevated in the EGFR mutants compared to non-EGFR mutants. A 7-lipid panel showed great promise in the stratification of EGFR from non-EGFR malignant PE. Our data revealed novel lipid candidate markers in the non-cellular fraction of PE that holds potential to aid the diagnosis of benign, EGFR mutation positive and negative NSCLC.

Indexed as

AgedAged, 80 and overBiomarkersCarcinoma, Non-Small-Cell LungChromatography, LiquidErbB ReceptorsFemaleHumansLipidsMaleMass SpectrometryMetabolomicsMiddle AgedMutant ProteinsPleural EffusionBiomarkersEGFR protein, humanErbB ReceptorsLipidsMutant Proteins

Identifiers

PMID27739449
PMCPMC5064315
OpenAlexW2531244821

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.