Evidence map›Paper›PMID 27739422›Full record

ArticleScientific reports2016

Decrease in pH destabilizes individual vault nanocages by weakening the inter-protein lateral interaction.

Aida Llauró, Pablo Guerra, Ravi Kant, Brian Bothner, Núria Verdaguer, Pedro J de Pablo

Abstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Protocol for AFM Nanoindentation of Viruses and Protein Cages.Methods in molecular biology (Clifton, N.J.) · 2027
    Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Mechanical Properties of Viruses.Sub-cellular biochemistry · 2024
    Review
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Review
  15. Transient OMicrobiome · 2018
    Article
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Aida LlauróDepartamento de Física de la Materia Condensada, UAM, Francisco Tomás y Valiente 7, 28049-Madrid, Spain.
Pablo GuerraStructural Biology Unit, Institut de Biologia Molecular de Barcelona, CSIC. Baldiri I Reixac 10, 08028-Barcelona, Spain.
Ravi KantDepartment of Chemistry and Biochemistry, Montana State University, Bozeman, Montana, USA.
Brian BothnerDepartment of Chemistry and Biochemistry, Montana State University, Bozeman, Montana, USA.
Núria VerdaguerStructural Biology Unit, Institut de Biologia Molecular de Barcelona, CSIC. Baldiri I Reixac 10, 08028-Barcelona, Spain.
Pedro J de PabloDepartamento de Física de la Materia Condensada, UAM, Francisco Tomás y Valiente 7, 28049-Madrid, Spain.

Funding

Mapping Adeno-associated Virus Capsid Structural and Dynamic TransitionsR01AI081961 · NIAID · MONTANA STATE UNIVERSITY - BOZEMAN · PI BOTHNER, BRIAN P · 2009 to 2012
$1.4M
NIAID NIH HHS R01 AI081961
6 · The paper itself

Abstract

Vault particles are naturally occurring proteinaceous cages with promising application as molecular containers. The use of vaults as functional transporters requires a profound understanding of their structural stability to guarantee the protection and controlled payload delivery. Previous results performed with bulk techniques or at non-physiological conditions have suggested pH as a parameter to control vault dynamics. Here we use Atomic Force Microscopy (AFM) to monitor the structural evolution of individual vault particles while changing the pH in real time. Our experiments show that decreasing the pH of the solution destabilize the barrel region, the central part of vault particles, and leads to the aggregation of the cages. Additional analyses using Quartz-Crystal Microbalance (QCM) and Differential Scanning Fluorimetry (DSF) are consistent with our single molecule AFM experiments. The observed topographical defects suggest that low pH weakens the bonds between adjacent proteins. We hypothesize that the observed effects are related to the strong polar character of the protein-protein lateral interactions. Overall, our study unveils the mechanism for the influence of a biologically relevant range of pHs on the stability and dynamics of vault particles.

Indexed as

Hydrogen-Ion ConcentrationMicroscopy, Atomic ForceModels, MolecularNanotechnologyProtein StabilityQuartz Crystal Microbalance TechniquesVault Ribonucleoprotein ParticlesVault Ribonucleoprotein Particles

Identifiers

PMID27739422
PMCPMC5064368

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.