Evidence map›Paper›PMID 27739413›Full record

ArticleInternational journal of molecular sciences2016

Identification and Functional Analysis of microRNAs Involved in the Anther Development in Cotton Genic Male Sterile Line Yu98-8A.

Xiaojie Yang, Yuanming Zhao, Deyi Xie, Yao Sun, Xunlu Zhu, Nardana Esmaeili, Zuoren Yang, Ye Wang, Guo Yin, Shuping Lv and 8 more

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
5.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 5 institutions in 2 countries.

Xiaojie YangEconomic Crop Research Institute, Henan Academy of Agricultural Sciences, Zhengzhou 450002, China. yyxxjj7910@sina.com.
Yuanming ZhaoEconomic Crop Research Institute, Henan Academy of Agricultural Sciences, Zhengzhou 450002, China. zzzym5@sina.com.
Deyi XieEconomic Crop Research Institute, Henan Academy of Agricultural Sciences, Zhengzhou 450002, China. xiedeyi101@sina.com.
Yao SunEconomic Crop Research Institute, Henan Academy of Agricultural Sciences, Zhengzhou 450002, China. yangming1697@sina.com.
Xunlu ZhuDepartment of Biological Sciences, Texas Tech University, Lubbock, TX 79409, USA. xunlu.zhu@ttu.edu.
Nardana EsmaeiliDepartment of Biological Sciences, Texas Tech University, Lubbock, TX 79409, USA. nardana.esmaeili@ttu.edu.
Zuoren YangState Key Laboratory of Cotton Biology, Cotton Research Institute, CAAS, Anyang 455000, China. yangzuoren4012@163.com.
Ye WangState Key Laboratory of Cotton Biology, Cotton Research Institute, CAAS, Anyang 455000, China. wangye_916@163.com.
Guo YinHandan Agronomy of Agricultural Sciences, Handan 056006, China. yinwenjie7514053@sina.com.
Shuping LvEconomic Crop Research Institute, Henan Academy of Agricultural Sciences, Zhengzhou 450002, China. lvshuping316@sina.com.
Lihong NieEconomic Crop Research Institute, Henan Academy of Agricultural Sciences, Zhengzhou 450002, China. nlh200999@sina.com.
Zhongjie TangEconomic Crop Research Institute, Henan Academy of Agricultural Sciences, Zhengzhou 450002, China. tangzhongjie2001@sina.com.
Fu'an ZhaoEconomic Crop Research Institute, Henan Academy of Agricultural Sciences, Zhengzhou 450002, China. fazcotton@sina.com.
Wu LiEconomic Crop Research Institute, Henan Academy of Agricultural Sciences, Zhengzhou 450002, China. cotton169@sina.com.
Neelam MishraDepartment of Biological Sciences, Texas Tech University, Lubbock, TX 79409, USA. neelam.mishra@ttu.edu.
Li SunDepartment of Biological Sciences, Texas Tech University, Lubbock, TX 79409, USA. li.sun@ttu.edu.
Wei ZhuAgronomy College, Henan Agricultural University, Zhengzhou 450002, China. zhuwei_2006z@sina.com.
Weiping FangEconomic Crop Research Institute, Henan Academy of Agricultural Sciences, Zhengzhou 450002, China. fangweiping0425@sina.com.
Henan Academy of Agricultural Sciences · CNTexas Tech University · USCotton Research Institute · CNHenan Agricultural University · CNHengyang Academy of Agricultural Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hybrid vigor contributes in a large way to the yield and quality of cotton (Gossypium hirsutum) fiber. Although microRNAs play essential regulatory roles in flower induction and development, it is still unclear if microRNAs are involved in male sterility, as the regulatory molecular mechanisms of male sterility in cotton need to be better defined. In this study, two independent small RNA libraries were constructed and sequenced from the young buds collected from the sporogenous cell formation to the meiosis stage of the male sterile line Yu98-8A and the near-isogenic line. Sequencing revealed 1588 and 1536 known microRNAs and 347 and 351 novel miRNAs from male sterile and male fertile libraries, respectively. MicroRNA expression profiles revealed that 49 conserved and 51 novel miRNAs were differentially expressed. Bioinformatic and degradome analysis indicated the regulatory complexity of microRNAs during flower induction and development. Further RT-qPCR and physiological analysis indicated that, among the different Kyoto Encyclopedia Gene and Genomes pathways, indole-3-acetic acid and gibberellic acid signaling transduction pathways may play pivotal regulatory functions in male sterility.

Indexed as

Base SequenceEnzyme-Linked Immunosorbent AssayFlowersGenes, PlantGossypiumIndoleacetic AcidsMicroRNAsReal-Time Polymerase Chain ReactionSequence AlignmentSequence Analysis, RNATranscriptomeindoleacetic acidIndoleacetic AcidsMicroRNAscottonmale abortionmiRNAsmolecular regulationphytohormonetargets

Identifiers

PMID27739413
PMCPMC5085710
OpenAlexW2529094268

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.