Evidence map›Paper›PMID 27739137›Full record

ArticleStem cells (Dayton, Ohio)2017

Zeb2 Regulates Cell Fate at the Exit from Epiblast State in Mouse Embryonic Stem Cells.

Agata Stryjewska, Ruben Dries, Tim Pieters, Griet Verstappen, Andrea Conidi, Kathleen Coddens, Annick Francis, Lieve Umans, Wilfred F J van IJcken, Geert Berx and 5 more

Open access · hybridAbstract read
In one paragraph

Article in Stem cells (Dayton, Ohio), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 58 citations in OpenAlex.

  1. Article
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  8. Identification of the DNA methylation signature of Mowat-Wilson syndrome.European journal of human genetics : EJHG · 2024
    Article
  9. Review
  10. Article
  11. Serum-Circulating microRNAs in Sporadic Inclusion Body Myositis.International journal of molecular sciences · 2023
    Article
  12. Article
  13. Article
  14. Circulation · 2022
    Article
  15. Review
  16. Review
  17. Review
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 3 countries.

Agata StryjewskaDepartment of Development and Regeneration, KU Leuven, Leuven, 3000, Belgium.
Ruben DriesDepartment of Development and Regeneration, KU Leuven, Leuven, 3000, Belgium.
Tim PietersVIB Inflammation Research Center (IRC), Unit Vascular Cell Biology.
Griet VerstappenDepartment of Development and Regeneration, KU Leuven, Leuven, 3000, Belgium.
Andrea ConidiDepartment of Cell Biology, Erasmus University Medical Center, Rotterdam, 3015 CN, The Netherlands.
Kathleen CoddensDepartment of Development and Regeneration, KU Leuven, Leuven, 3000, Belgium.
Annick FrancisDepartment of Development and Regeneration, KU Leuven, Leuven, 3000, Belgium.
Lieve UmansDepartment of Development and Regeneration, KU Leuven, Leuven, 3000, Belgium.
Wilfred F J van IJckenDepartment of Cell Biology, Erasmus University Medical Center, Rotterdam, 3015 CN, The Netherlands.
Geert BerxDepartment of Biomedical Molecular Biology.
Leo A van GrunsvenDepartment of Cell Biology, Liver Cell Biology Lab, Vrije Universiteit Brussel, Jette, 1090, Belgium.
Frank G GrosveldDepartment of Cell Biology, Erasmus University Medical Center, Rotterdam, 3015 CN, The Netherlands.
Steven GoossensVIB Inflammation Research Center (IRC), Unit Vascular Cell Biology.
Jody J HaighVIB Inflammation Research Center (IRC), Unit Vascular Cell Biology.
Danny HuylebroeckDepartment of Development and Regeneration, KU Leuven, Leuven, 3000, Belgium.
KU Leuven · BEErasmus MC · NLGhent University · BEGhent University Hospital · BEMonash University · AUVIB-UGent Center for Inflammation Research · BEVrije Universiteit Brussel · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In human embryonic stem cells (ESCs) the transcription factor Zeb2 regulates neuroectoderm versus mesendoderm formation, but it is unclear how Zeb2 affects the global transcriptional regulatory network in these cell-fate decisions. We generated Zeb2 knockout (KO) mouse ESCs, subjected them as embryoid bodies (EBs) to neural and general differentiation and carried out temporal RNA-sequencing (RNA-seq) and reduced representation bisulfite sequencing (RRBS) analysis in neural differentiation. This shows that Zeb2 acts preferentially as a transcriptional repressor associated with developmental progression and that Zeb2 KO ESCs can exit from their naïve state. However, most cells in these EBs stall in an early epiblast-like state and are impaired in both neural and mesendodermal differentiation. Genes involved in pluripotency, epithelial-to-mesenchymal transition (EMT), and DNA-(de)methylation, including Tet1, are deregulated in the absence of Zeb2. The observed elevated Tet1 levels in the mutant cells and the knowledge of previously mapped Tet1-binding sites correlate with loss-of-methylation in neural-stimulating conditions, however, after the cells initially acquired the correct DNA-methyl marks. Interestingly, cells from such Zeb2 KO EBs maintain the ability to re-adapt to 2i + LIF conditions even after prolonged differentiation, while knockdown of Tet1 partially rescues their impaired differentiation. Hence, in addition to its role in EMT, Zeb2 is critical in ESCs for exit from the epiblast state, and links the pluripotency network and DNA-methylation with irreversible commitment to differentiation. Stem Cells 2017;35:611-625.

Indexed as

Cell LineageAnimalsCell DifferentiationDNA-Binding ProteinsDNA MethylationDown-RegulationEmbryoid BodiesGerm LayersMiceMice, KnockoutMouse Embryonic Stem CellsNeuronsPhenotypePluripotent Stem CellsPrincipal Component AnalysisProto-Oncogene ProteinsDNA-Binding ProteinsProto-Oncogene ProteinsRepressor ProteinsTET1 protein, mouseZEB2 protein, mouseZinc Finger E-box Binding Homeobox 2Cell differentiationDNA-methylationEmbryonic stem cellsPluripotent stem cellsRepressorsRNA-sequencingTranscription factorsTranscriptom

Identifiers

PMID27739137
PMCPMC5396376
OpenAlexW2531086465

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.