Evidence map›Paper›PMID 27738243›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Autotaxin-mediated lipid signaling intersects with LIF and BMP signaling to promote the naive pluripotency transcription factor program.

Cody Kime, Masayo Sakaki-Yumoto, Leeanne Goodrich, Yohei Hayashi, Salma Sami, Rik Derynck, Michio Asahi, Barbara Panning, Shinya Yamanaka, Kiichiro Tomoda

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 38 citations in OpenAlex.

  1. Review
  2. Article
  3. The role of BMP4 signaling in trophoblast emergence from pluripotency.Cellular and molecular life sciences : CMLS · 2022
    Review
  4. Article
  5. From Mice to Men: Generation of Human Blastocyst-Like StructuresFrontiers in cell and developmental biology · 2022
    Review
  6. Review
  7. Revisiting the role of lysophosphatidic acid in stem cell biology.Experimental biology and medicine (Maywood, N.J.) · 2021
    Review
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Development in a Dish-Frontiers in cell and developmental biology · 2021
    Review
  14. Article
  15. Article
  16. Review
  17. Review
  18. Energy Metabolism Regulates Stem Cell Pluripotency.Frontiers in cell and developmental biology · 2020
    Review
  19. Review
  20. Overexpression of NaThe Journal of biological chemistry · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Cody KimeGladstone Institute of Cardiovascular Disease, San Francisco, CA 94158.
Masayo Sakaki-YumotoEli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, Programs in Cell Biology and Developmental and Stem Cell Biology, Department of Cell and Tissue Biology, University of California, San Francisco, CA 94143.
Leeanne GoodrichDepartment of Biochemistry and Biophysics, University of California, San Francisco, CA 94158.
Yohei HayashiGladstone Institute of Cardiovascular Disease, San Francisco, CA 94158.
Salma SamiGladstone Institute of Cardiovascular Disease, San Francisco, CA 94158.
Rik DerynckEli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, Programs in Cell Biology and Developmental and Stem Cell Biology, Department of Cell and Tissue Biology, University of California, San Francisco, CA 94143.
Michio AsahiDepartment of Pharmacology, Faculty of Medicine, Osaka Medical College, Osaka 569-8686, Japan.
Barbara PanningDepartment of Biochemistry and Biophysics, University of California, San Francisco, CA 94158.
Shinya YamanakaGladstone Institute of Cardiovascular Disease, San Francisco, CA 94158; yamanaka@cira.kyoto-u.ac.jp kiichiro.tomoda@gladstone.ucsf.edu.
Kiichiro TomodaGladstone Institute of Cardiovascular Disease, San Francisco, CA 94158; yamanaka@cira.kyoto-u.ac.jp kiichiro.tomoda@gladstone.ucsf.edu.
Gladstone Institutes · USUniversity of California, San Francisco · USBroad Center · USOsaka Medical and Pharmaceutical University · JP

Funding

Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STEVEN Grant DEEKS · 1988 to 2026
$93.6M
The Epigenetic Landscape of Heart DevelopmentU01HL098179 · NHLBI · J. DAVID GLADSTONE INSTITUTES · PI BOYER, LAURIE A, BRUNEAU, BENOIT GAETAN · 2009 to 2014
$10.0M
Induced Pluripotent Stem Cells in the Understanding and Treatment of Heart DiseasU01HL100406 · NHLBI · J. DAVID GLADSTONE INSTITUTES · PI BRUNEAU, BENOIT GAETAN, CONKLIN, BRUCE R · 2009 to 2015
$9.4M
EXTRAMULAR RESEARCH FACILITIES CONSTRUCTIONC06RR018928 · NCRR · J. DAVID GLADSTONE INSTITUTES · PI MAHLEY, ROBERT W. · 2003 to 2003
$2.1M
Investigation of X chromosome organization before the onset of X-inactivationR01GM100341 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI PANNING, BARBARA · 2012 to 2015
$1.2M
Regulation of Xist RNA processing in embryonic stem cellsR01GM088506 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI PANNING, BARBARA · 2010 to 2013
$1.1M
BD FACSAria II Flow CytometerS10RR028962 · NCRR · J. DAVID GLADSTONE INSTITUTES · PI CAVROIS, MARIELLE · 2011 to 2011
$544k
NCRR NIH HHS C06 RR018928NCRR NIH HHS S10 RR028962NHLBI NIH HHS U01 HL098179NHLBI NIH HHS U01 HL100406NIAID NIH HHS P30 AI027763NIGMS NIH HHS R01 GM088506NIGMS NIH HHS R01 GM100341
6 · The paper itself

Abstract

Developmental signaling molecules are used for cell fate determination, and understanding how their combinatorial effects produce the variety of cell types in multicellular organisms is a key problem in biology. Here, we demonstrate that the combination of leukemia inhibitory factor (LIF), bone morphogenetic protein 4 (BMP4), lysophosphatidic acid (LPA), and ascorbic acid (AA) efficiently converts mouse primed pluripotent stem cells (PSCs) into naive PSCs. Signaling by the lipid LPA through its receptor LPAR1 and downstream effector Rho-associated protein kinase (ROCK) cooperated with LIF signaling to promote this conversion. BMP4, which also stimulates conversion to naive pluripotency, bypassed the need for exogenous LPA by increasing the activity of the extracellular LPA-producing enzyme autotaxin (ATX). We found that LIF and LPA-LPAR1 signaling affect the abundance of signal transducer and activator of transcription 3 (STAT3), which induces a previously unappreciated Kruppel-like factor (KLF)2-KLF4-PR domain 14 (PRDM14) transcription factor circuit key to establish naive pluripotency. AA also affects this transcription factor circuit by controlling PRDM14 expression. Thus, our study reveals that ATX-mediated autocrine lipid signaling promotes naive pluripotency by intersecting with LIF and BMP4 signaling.

Indexed as

AnimalsAscorbic AcidBone Morphogenetic Protein 4Cell LineCellular ReprogrammingDrug SynergismGene Expression RegulationKruppel-Like Factor 4Leukemia Inhibitory FactorLysophospholipase DLysophospholipidsMice, Inbred C57BLPhosphoric Diester HydrolasesPluripotent Stem CellsTranscription FactorsVitaminsAscorbic AcidBone Morphogenetic Protein 4Klf4 protein, mouseKruppel-Like Factor 4Leukemia Inhibitory Factorlysophosphatidic acidLysophospholipase DLysophospholipidsPhosphoric Diester HydrolasesTranscription FactorsVitaminsBMP4 signalingKLF2-KLF4-PRDM14 circuitLIF signalingLPA lipid signalingnaive pluripotency

Identifiers

PMID27738243
PMCPMC5098653
OpenAlexW2530703292

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.