Evidence map›Paper›PMID 27738136›Full record

ArticleNucleic acids research2017

Dynamic unwrapping of nucleosomes by HsRAD51 that includes sliding and rotational motion of histone octamers.

Gayan Senavirathne, Santosh K Mahto, Jeungphill Hanne, Daniel O'Brian, Richard Fishel

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.2field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Pioneer factors and their in vitro identification methods.Molecular genetics and genomics : MGG · 2020
    Review
  5. Long repeating (TTAGGG)The Journal of biological chemistry · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Gayan SenavirathneDepartment of Cancer Biology and Genetics, The Ohio State University Medical Center, Columbus, OH 43210, USA.
Santosh K MahtoDepartment of Cancer Biology and Genetics, The Ohio State University Medical Center, Columbus, OH 43210, USA.
Jeungphill HanneDepartment of Cancer Biology and Genetics, The Ohio State University Medical Center, Columbus, OH 43210, USA.
Daniel O'BrianDepartment of Cancer Biology and Genetics, The Ohio State University Medical Center, Columbus, OH 43210, USA.
Richard FishelDepartment of Cancer Biology and Genetics, The Ohio State University Medical Center, Columbus, OH 43210, USA rfishel@osu.edu.
The Ohio State University · USThe Ohio State University Wexner Medical Center · US

Funding

Translational Therapeutics Research Program (TT)P30CA016058 · NCI · OHIO STATE UNIVERSITY · PI Tasleem J Padamsee · 1985 to 2026
$132.3M
Recombination/Repair Complex in Human CellsR01GM080176 · NIGMS · OHIO STATE UNIVERSITY · PI FISHEL, RICHARD · 2006 to 2015
$3.2M
RECOMBINATION/REPAIR COMPLEX IN HUMAN CELLSR01CA056542 · NCI · UNIVERSITY OF VERMONT &ST AGRIC COLLEGE · PI FISHEL, RICHARD · 1993 to 2005
$2.3M
NCI NIH HHS P30 CA016058NCI NIH HHS R01 CA056542NIGMS NIH HHS R01 GM080176
6 · The paper itself

Abstract

Wrapping of genomic DNA into nucleosomes poses thermodynamic and kinetic barriers to biological processes such as replication, transcription, repair and recombination. Previous biochemical studies have demonstrated that in the presence of adenosine triphosphate (ATP) the human RAD51 (HsRAD51) recombinase can form a nucleoprotein filament (NPF) on double-stranded DNA (dsDNA) that is capable of unwrapping the nucleosomal DNA from the histone octamer (HO). Here, we have used single molecule Förster Resonance Energy Transfer (smFRET) to examine the real time nucleosome dynamics in the presence of the HsRAD51 NPF. We show that oligomerization of HsRAD51 leads to stepwise, but stochastic unwrapping of the DNA from the HO in the presence of ATP. The highly reversible dynamics observed in single-molecule trajectories suggests an antagonistic mechanism between HsRAD51 binding and rewrapping of the DNA around the HO. These stochastic dynamics were independent of the nucleosomal DNA sequence or the asymmetry created by the presence of a linker DNA. We also observed sliding and rotational oscillations of the HO with respect to the nucleosomal DNA. These studies underline the dynamic nature of even tightly associated protein-DNA complexes such as nucleosomes.

Indexed as

Adenosine TriphosphateDNADNA ReplicationHistonesHumansHydrolysisModels, BiologicalNucleoproteinsNucleosomesProtein BindingProtein MultimerizationRad51 RecombinaseAdenosine TriphosphateDNAHistonesNucleoproteinsNucleosomesRad51 Recombinase

Identifiers

PMID27738136
PMCPMC5314800
OpenAlexW2531573921

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.