Evidence map›Paper›PMID 27736903›Full record

ArticlePloS one2016

A Quadruplex Real-Time PCR Assay for the Rapid Detection and Differentiation of the Most Relevant Members of the B. pseudomallei Complex: B. mallei, B. pseudomallei, and B. thailandensis.

Chinn-Woan Lowe, Benjamin A Satterfield, Daniel B Nelson, Joseph D Thiriot, Michael J Heder, Jordon K March, David S Drake, Cynthia S Lew, Annette J Bunnell, Emily S Moore and 2 more

Open access · goldAbstract readEvaluation Study
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 41 citations in OpenAlex.

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  8. BipD ofMicroorganisms · 2021
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  9. Human Melioidosis.Clinical microbiology reviews · 2020
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  10. Article
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  12. Evaluation of matrix-assisted laser desorption/ionization time-of-flight mass spectrometry for identifying Burkholderia pseudomallei and Burkholderia thailandensis isolates.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2019
    Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Chinn-Woan LoweDepartment of Microbiology and Molecular Biology, Brigham Young University, Provo, UT, 84602, United States of America.
Benjamin A SatterfieldDepartment of Microbiology and Molecular Biology, Brigham Young University, Provo, UT, 84602, United States of America.
Daniel B NelsonDepartment of Microbiology and Molecular Biology, Brigham Young University, Provo, UT, 84602, United States of America.
Joseph D ThiriotDepartment of Microbiology and Molecular Biology, Brigham Young University, Provo, UT, 84602, United States of America.
Michael J HederDepartment of Microbiology and Molecular Biology, Brigham Young University, Provo, UT, 84602, United States of America.
Jordon K MarchDepartment of Microbiology and Molecular Biology, Brigham Young University, Provo, UT, 84602, United States of America.
David S DrakeDepartment of Microbiology and Molecular Biology, Brigham Young University, Provo, UT, 84602, United States of America.
Cynthia S LewDepartment of Microbiology and Molecular Biology, Brigham Young University, Provo, UT, 84602, United States of America.
Annette J BunnellDepartment of Microbiology and Molecular Biology, Brigham Young University, Provo, UT, 84602, United States of America.
Emily S MooreDepartment of Microbiology and Molecular Biology, Brigham Young University, Provo, UT, 84602, United States of America.
Kim L O'NeillDepartment of Microbiology and Molecular Biology, Brigham Young University, Provo, UT, 84602, United States of America.
Richard A RobisonDepartment of Microbiology and Molecular Biology, Brigham Young University, Provo, UT, 84602, United States of America.
Brigham Young University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Burkholderia pseudomallei complex classically consisted of B. mallei, B. pseudomallei, and B. thailandensis, but has now expanded to include B. oklahomensis, B. humptydooensis, and three unassigned Burkholderia clades. Methods for detecting and differentiating the B. pseudomallei complex has been the topic of recent research due to phenotypic and genotypic similarities of these species. B. mallei and B. pseudomallei are recognized as CDC Tier 1 select agents, and are the causative agents of glanders and melioidosis, respectively. Although B. thailandensis and B. oklahomensis are generally avirulent, both display similar phenotypic characteristics to that of B. pseudomallei. B. humptydooensis and the Burkholderia clades are genetically similar to the B. pseudomallei complex, and are not associated with disease. Optimal identification of these species remains problematic, and PCR-based methods can resolve issues with B. pseudomallei complex detection and differentiation. Currently, no PCR assay is available that detects the major species of the B. pseudomallei complex. A real-time PCR assay in a multiplex single-tube format was developed to simultaneously detect and differentiate B. mallei, B. pseudomallei, and B. thailandensis, and a common sequence found in B. pseudomallei, B. mallei, B. thailandensis, and B. oklahomensis. A total of 309 Burkholderia isolates and 5 other bacterial species were evaluated. The assay was 100% sensitive and specific, demonstrated sensitivity beyond culture and GC methods for the isolates tested, and is completed in about an hour with a detection limit between 2.6pg and 48.9pg of gDNA. Bioinformatic analyses also showed the assay is likely 100% specific and sensitive for all 84 fully sequenced B. pseudomallei, B. mallei, B. thailandensis, and B. oklahomensis strains currently available in GenBank. For these reasons, this assay could be a rapid and sensitive tool in the detection and differentiation for those species of the B. pseudomallei complex with recognized clinical and practical significance.

Indexed as

BurkholderiaBurkholderia InfectionsBurkholderia malleiBurkholderia pseudomalleiDNA, BacterialGlandersHumansMelioidosisReal-Time Polymerase Chain ReactionSensitivity and SpecificitySequence Analysis, DNADNA, Bacterial

Identifiers

PMID27736903
PMCPMC5063335
OpenAlexW2531284310

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.