Evidence map›Paper›PMID 27736770›Full record

ArticleAntimicrobial agents and chemotherapy2016

Design and Validation of Novel Chikungunya Virus Protease Inhibitors.

Pratyush Kumar Das, Laura Puusepp, Finny S Varghese, Age Utt, Tero Ahola, Dzmitry G Kananovich, Margus Lopp, Andres Merits, Mati Karelson

Open access · bronzeAbstract readValidation Study
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 66 citations in OpenAlex.

  1. PAGE-Based Measurements of nsP2 Protease Activity.Methods in molecular biology (Clifton, N.J.) · 2027
    Article
  2. Article
  3. Review
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  5. Review
  6. Phenol and chromone compounds forPharmaceutical science advances · 2025
    Article
  7. Review
  8. Article
  9. Article
  10. A robust fluorogenic substrate for chikungunya virus protease (nsP2) activity.Protein science : a publication of the Protein Society · 2025
    Article
  11. Review
  12. Review
  13. Article
  14. Identification of a cell-active chikungunya virus nsP2 protease inhibitor using a covalent fragment-based screening approach.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  15. Article
  16. Article
  17. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Pratyush Kumar DasInstitute of Technology, University of Tartu, Tartu, Estonia.
Laura PuuseppInstitute of Chemistry, University of Tartu, Tartu, Estonia.
Finny S VargheseDepartment of Food and Environmental Sciences, University of Helsinki, Helsinki, Finland.
Age UttInstitute of Technology, University of Tartu, Tartu, Estonia.
Tero AholaDepartment of Food and Environmental Sciences, University of Helsinki, Helsinki, Finland.
Dzmitry G KananovichDepartment of Chemistry, Tallinn University of Technology, Tallinn, Estonia.
Margus LoppDepartment of Chemistry, Tallinn University of Technology, Tallinn, Estonia.
Andres MeritsInstitute of Technology, University of Tartu, Tartu, Estonia andres.merits@ut.ee mati.karelson@ut.ee.
Mati KarelsonInstitute of Chemistry, University of Tartu, Tartu, Estonia andres.merits@ut.ee mati.karelson@ut.ee.
University of Tartu · EETallinn University of Technology · EEUniversity of Helsinki · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chikungunya virus (CHIKV; genus Alphavirus) is the causative agent of chikungunya fever. CHIKV replication can be inhibited by some broad-spectrum antiviral compounds; in contrast, there is very little information about compounds specifically inhibiting the enzymatic activities of CHIKV replication proteins. These proteins are translated in the form of a nonstructural (ns) P1234 polyprotein precursor from the CHIKV positive-strand RNA genome. Active forms of replicase enzymes are generated using the autoproteolytic activity of nsP2. The available three-dimensional (3D) structure of nsP2 protease has made it a target for in silico drug design; however, there is thus far little evidence that the designed compounds indeed inhibit the protease activity of nsP2 and/or suppress CHIKV replication. In this study, a set of 12 compounds, predicted to interact with the active center of nsP2 protease, was designed using target-based modeling. The majority of these compounds were shown to inhibit the ability of nsP2 to process recombinant protein and synthetic peptide substrates. Furthermore, all compounds found to be active in these cell-free assays also suppressed CHIKV replication in cell culture, the 50% effective concentration (EC

Indexed as

Genome, ViralAnimalsAntiviral AgentsCarboxylic AcidsCatalytic DomainCell LineChikungunya virusCricetinaeCrystallography, X-RayCyclopropanesCysteine EndopeptidasesDrug DesignEpithelial CellsInhibitory Concentration 50Molecular Docking SimulationPolyproteinsAntiviral AgentsCarboxylic AcidsCyclopropanesCysteine EndopeptidasesnsP2 proteinasePolyproteinsProtease InhibitorsRNA Helicases

Identifiers

PMID27736770
PMCPMC5119020
OpenAlexW2531207559

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.