Evidence map›Paper›PMID 27734114›Full record

ArticleMicrobial ecology2017

Development of Soil Bacterial Communities in Volcanic Ash Microcosms in a Range of Climates.

Dorsaf Kerfahi, Ryunosuke Tateno, Koichi Takahashi, HyunJun Cho, Hyoki Kim, Jonathan M Adams

Abstract read
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Article in Microbial ecology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. First Report ofPathogens (Basel, Switzerland) · 2024
    Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Dorsaf KerfahiDepartment of Biological Sciences, Seoul National University, Seoul, Republic of Korea.
Ryunosuke TatenoField Science Education and Research Center, Kyoto University, Kyoto, Japan.
Koichi TakahashiDepartment of Biology, Faculty of Science, Shinshu University, Asahi, Matsumoto, Japan.
HyunJun ChoDepartment of Biological Sciences, Seoul National University, Seoul, Republic of Korea.
Hyoki KimCelemics, Inc. 612 Avison Biomedical Research Center, Yonsei Medical Center, Seoul, Republic of Korea.
Jonathan M AdamsDepartment of Biological Sciences, Seoul National University, Seoul, Republic of Korea. geograph.ecol@gmail.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

There is considerable interest in understanding the processes of microbial development in volcanic ash. We tested the predictions that there would be (1) a distinctive bacterial community associated with soil development on volcanic ash, including groups previously implicated in weathering studies; (2) a slower increase in bacterial abundance and soil C and N accumulation in cooler climates; and (3) a distinct communities developing on the same substrate in different climates. We set up an experiment, taking freshly fallen, sterilized volcanic ash from Sakurajima volcano, Japan. Pots of ash were positioned in multiple locations, with mean annual temperature (MAT) ranging from 18.6 to -3 °C. Within 12 months, bacteria were detectable by qPCR in all pots. By 24 months, bacterial copy numbers had increased by 10-100 times relative to a year before. C and N content approximately doubled between 12 and 24 months. HiSeq and MiSeq sequencing of the 16S rRNA gene revealed a distinctive bacterial community, different from developed vegetated soils in the same areas, for example in containing an abundance of unclassified bacterial groups. Community composition also differed between the ash pots at different sites, while showing no pattern in relation to MAT. Contrary to our predictions, the bacterial abundance did not show any relation to MAT. It also did not correlate to pH or N, and only C was statistically significant. It appears that bacterial community development on volcanic ash can be a rapid process not closely sensitive to temperature, involving distinct communities from developed soils.

Indexed as

ClimateMicrobial ConsortiaPhylogenySoil MicrobiologyVolcanic EruptionsBacteriaBiodiversityCarbonDNA, BacterialHydrogen-Ion ConcentrationJapanNitrogenPhotosynthesisReal-Time Polymerase Chain ReactionRNA, Ribosomal, 16SSequence Analysis, DNACarbonDNA, BacterialNitrogenRNA, Ribosomal, 16SSoil16S rRNA geneBacterial communityCommunity compositionVolcanic ashWeathering bacteria

Identifiers

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.