Evidence map›Paper›PMID 27733625›Full record

ArticleMolecular biology of the cell2016

Analysis of diffusion in curved surfaces and its application to tubular membranes.

Colin James Stockdale Klaus, Krishnan Raghunathan, Emmanuele DiBenedetto, Anne K Kenworthy

Abstract read
In one paragraph

Article in Molecular biology of the cell, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Colin James Stockdale KlausDepartment of Mathematics, Vanderbilt University, Nashville, TN 37232.
Krishnan RaghunathanDepartment of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, TN 37232.
Emmanuele DiBenedettoDepartment of Mathematics, Vanderbilt University, Nashville, TN 37232 anne.kenworthy@vanderbilt.edu em.diben@vanderbilt.edu.
Anne K KenworthyDepartment of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, TN 37232 anne.kenworthy@vanderbilt.edu em.diben@vanderbilt.edu.

Funding

Function and assembly of toxin-stabilized domainsR01GM106720 · NIGMS · VANDERBILT UNIVERSITY · PI KENWORTHY, ANNE K · 2013 to 2020
$2.7M
NIGMS NIH HHS R01 GM106720
6 · The paper itself

Abstract

Diffusion of particles in curved surfaces is inherently complex compared with diffusion in a flat membrane, owing to the nonplanarity of the surface. The consequence of such nonplanar geometry on diffusion is poorly understood but is highly relevant in the case of cell membranes, which often adopt complex geometries. To address this question, we developed a new finite element approach to model diffusion on curved membrane surfaces based on solutions to Fick's law of diffusion and used this to study the effects of geometry on the entry of surface-bound particles into tubules by diffusion. We show that variations in tubule radius and length can distinctly alter diffusion gradients in tubules over biologically relevant timescales. In addition, we show that tubular structures tend to retain concentration gradients for a longer time compared with a comparable flat surface. These findings indicate that sorting of particles along the surfaces of tubules can arise simply as a geometric consequence of the curvature without any specific contribution from the membrane environment. Our studies provide a framework for modeling diffusion in curved surfaces and suggest that biological regulation can emerge purely from membrane geometry.

Indexed as

DiffusionAlgorithmsBiophysical PhenomenaCell MembraneComputer SimulationHydrodynamicsMembranesModels, BiologicalModels, TheoreticalSoftwareStructure-Activity Relationship

Identifiers

PMID27733625
PMCPMC5170615

What OpenQuestion holds

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LicenceCC BY-NC-SA
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.