Evidence map›Paper›PMID 27733511›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Assembly and transfer of tripartite integrative and conjugative genetic elements.

Timothy L Haskett, Jason J Terpolilli, Amanuel Bekuma, Graham W O'Hara, John T Sullivan, Penghao Wang, Clive W Ronson, Joshua P Ramsay

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
21.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 83 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Genome sequence ofMicrobiology resource announcements · 2023
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Timothy L HaskettCentre for Rhizobium Studies, Murdoch University, Perth, WA 6150, Australia.
Jason J TerpolilliCentre for Rhizobium Studies, Murdoch University, Perth, WA 6150, Australia.
Amanuel BekumaCentre for Rhizobium Studies, Murdoch University, Perth, WA 6150, Australia.
Graham W O'HaraCentre for Rhizobium Studies, Murdoch University, Perth, WA 6150, Australia.
John T SullivanDepartment of Microbiology and Immunology, University of Otago, Dunedin 9016, New Zealand.
Penghao WangCentre for Rhizobium Studies, Murdoch University, Perth, WA 6150, Australia.
Clive W RonsonDepartment of Microbiology and Immunology, University of Otago, Dunedin 9016, New Zealand.
Joshua P RamsaySchool of Biomedical Sciences and Curtin Health Innovation Research Institute, Curtin University, Perth, WA 6102, Australia josh.ramsay@curtin.edu.au.ORCID 0000-0002-1301-7077
Murdoch University · AUUniversity of Otago · NZCurtin University · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Integrative and conjugative elements (ICEs) are ubiquitous mobile genetic elements present as "genomic islands" within bacterial chromosomes. Symbiosis islands are ICEs that convert nonsymbiotic mesorhizobia into symbionts of legumes. Here we report the discovery of symbiosis ICEs that exist as three separate chromosomal regions when integrated in their hosts, but through recombination assemble as a single circular ICE for conjugative transfer. Whole-genome comparisons revealed exconjugants derived from nonsymbiotic mesorhizobia received three separate chromosomal regions from the donor Mesorhizobium ciceri WSM1271. The three regions were each bordered by two nonhomologous integrase attachment (att) sites, which together comprised three homologous pairs of attL and attR sites. Sequential recombination between each attL and attR pair produced corresponding attP and attB sites and joined the three fragments to produce a single circular ICE, ICEMcSym

Indexed as

Recombination, GeneticConjugation, GeneticDNA Transposable ElementsFabaceaeGene Transfer, HorizontalGenome, BacterialGenomic IslandsIntegrasesMesorhizobiumPlasmidsSymbiosisDNA Transposable ElementsIntegrasesconjugationintegraseintegrative and conjugative elementsrecombinationsymbiosis

Identifiers

PMID27733511
PMCPMC5087020
OpenAlexW2531780971

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.