ArticleNucleic acids research2017
Ontobee: A linked ontology data server to support ontology term dereferencing, linkage, query and integration.
Article in Nucleic acids research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 90 papers, 1 of them a synthesis that pooled it.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
90 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Profiling of human lung and gut microbiomes in different conditions of chronic obstructive pulmonary disease using ontology-based evidence synthesis and reasoning.Frontiers in cellular and infection microbiology · 2026Pooled it
- Machine learning-enabled wastewater-based surveillance for emerging pathogen detection and monitoring: current applications, challenges, and future prospects.Emerging microbes & infections · 2026Review
- RGPA-GCN: Graph convolutional networks for rice gene-phenotype association prediction.Plant biology (Stuttgart, Germany) · 2026Article
- Immune biomarkers, profiles, and responses: a vaccine ontology perspective.Journal of biomedical semantics · 2026Article
- Representing dental caries and dysbiosis within the oral microbiome in the Oral Health and Disease Ontology.Journal of biomedical semantics · 2026Article
- Representing dental restoration materials in the oral health and disease ontology.Journal of biomedical semantics · 2026Article
- SEA CDM: Study-Experiment-Assay Common Data Model and Databases for Cross-Domain Data Integration and Analysis.Scientific data · 2026Article
- The Ontology of Adverse Events in 2025.Scientific data · 2026Article
- Generation of Interactive Knowledge Graphs to Enable Research of the Effects of Trauma Center Organization on Patient Outcomes.Knowledge graphs and semantic web : 7th international conference, KGSWC 2025, Leipzig, Germany, November 26-28, 2025 : proceedings. KGSWC (Conference) (7th : 2025 : Leipzig, Germany) · 2026Article
- Vaxjo 2.0: An ontology- and large language model-powered knowledge base of vaccine adjuvants and mechanisms.Frontiers in cellular and infection microbiology · 2026Article
- Systematic annotation and analysis of susceptibility genes associated with vaccine adverse events.BMC medical genomics · 2025Article
- Representing Dental Caries and Dysbiosis within the Oral Microbiome in the Oral Health and Disease Ontology.Research square · 2025Article
- VO: The Vaccine Ontology.bioRxiv : the preprint server for biology · 2025Article
- Mapping and Harmonization of CVX vaccine terms to the Vaccine Ontology.bioRxiv : the preprint server for biology · 2025Article
- A fourfold pathogen reference ontology suite.Journal of biomedical semantics · 2025Article
- BioPortal: an open community resource for sharing, searching, and utilizing biomedical ontologies.Nucleic acids research · 2025Article
- OLS4: a new Ontology Lookup Service for a growing interdisciplinary knowledge ecosystem.Bioinformatics (Oxford, England) · 2025Article
- A Fourfold Pathogen Reference Ontology Suite.ArXiv · 2025Article
- GNOme, an ontology for glycan naming and subsumption.Analytical and bioanalytical chemistry · 2025Article
- A change language for ontologies and knowledge graphs.Database : the journal of biological databases and curation · 2025Article
30 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
10 authors.
Funding
Abstract
Linked Data (LD) aims to achieve interconnected data by representing entities using Unified Resource Identifiers (URIs), and sharing information using Resource Description Frameworks (RDFs) and HTTP. Ontologies, which logically represent entities and relations in specific domains, are the basis of LD. Ontobee (http://www.ontobee.org/) is a linked ontology data server that stores ontology information using RDF triple store technology and supports query, visualization and linkage of ontology terms. Ontobee is also the default linked data server for publishing and browsing biomedical ontologies in the Open Biological Ontology (OBO) Foundry (http://obofoundry.org) library. Ontobee currently hosts more than 180 ontologies (including 131 OBO Foundry Library ontologies) with over four million terms. Ontobee provides a user-friendly web interface for querying and visualizing the details and hierarchy of a specific ontology term. Using the eXtensible Stylesheet Language Transformation (XSLT) technology, Ontobee is able to dereference a single ontology term URI, and then output RDF/eXtensible Markup Language (XML) for computer processing or display the HTML information on a web browser for human users. Statistics and detailed information are generated and displayed for each ontology listed in Ontobee. In addition, a SPARQL web interface is provided for custom advanced SPARQL queries of one or multiple ontologies.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.