Evidence map›Paper›PMID 27733232›Full record

ArticleBMB reports2016

Crystallographic snapshots of active site metal shift in E. coli fructose 1,6-bisphosphate aldolase.

Huyen-Thi Tran, Seon-Hwa Lee, Thien-Hoang Ho, Seung-Hye Hong, Kim-Hung Huynh, Yeh-Jin Ahn, Deok-Kun Oh, Lin-Woo Kang

Open access · goldAbstract read
In one paragraph

Article in BMB reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. The metal cofactor: stationary or mobile?Applied microbiology and biotechnology · 2024
    Review
  2. Substrate Induced Movement of the Metal Cofactor between Active and Resting State.Angewandte Chemie (International ed. in English) · 2022
    Article
  3. Toward a structome of Acinetobacter baumannii drug targets.Protein science : a publication of the Protein Society · 2020
    Article
  4. Metalloproteins in the Biology of Heterocysts.Life (Basel, Switzerland) · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Huyen-Thi TranDepartment of Biological Sciences, Konkuk University, Seoul 05029, Korea; Department of Biotechnology and Food Technology, Industrial University of Ho Chi Minh City, 12 Nguyen Van Bao Street, Ward 4, Go Vap District, Ho Chi Minh City, Vietnam.
Seon-Hwa LeeDepartment of Bioscience and Biotechnology, Konkuk University, Seoul 05029, Korea.
Thien-Hoang HoDepartment of Biological Sciences, Konkuk University, Seoul 05029, Korea.
Seung-Hye HongDepartment of Bioscience and Biotechnology, Konkuk University, Seoul 05029, Korea.
Kim-Hung HuynhDepartment of Biological Sciences, Konkuk University, Seoul 05029, Korea.
Yeh-Jin AhnDepartment of Life Science, Sangmyung University, Seoul 03016, Korea.
Deok-Kun OhDepartment of Bioscience and Biotechnology, Konkuk University, Seoul 05029, Korea.
Lin-Woo KangDepartment of Biological Sciences, Konkuk University, Seoul 05029, Korea.
Konkuk University · KRSangmyung University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fructose 1,6-bisphosphate aldolase (FBA) is important for both glycolysis and gluconeogenesis in life. Class II (zinc dependent) FBA is an attractive target for the development of antibiotics against protozoa, bacteria, and fungi, and is also widely used to produce various high-value stereoisomers in the chemical and pharmaceutical industry. In this study, the crystal structures of class II Escherichia coli FBA (EcFBA) were determined from four different crystals, with resolutions between 1.8 Å and 2.0 Å. Native EcFBA structures showed two separate sites of Zn1 (interior position) and Zn2 (active site surface position) for Zn2+ ion. Citrate and TRIS bound EcFBA structures showed Zn2+ position exclusively at Zn2. Crystallographic snapshots of EcFBA structures with and without ligand binding proposed the rationale of metal shift at the active site, which might be a hidden mechanism to keep the trace metal cofactor Zn2+ within EcFBA without losing it. [BMB Reports 2016; 49(12): 681-686].

Indexed as

Binding SitesCatalysisCatalytic DomainCitric AcidCrystallography, X-RayEscherichia coliFructose-Bisphosphate AldolaseProtein Structure, QuaternaryRecombinant ProteinsZincCitric AcidFructose-Bisphosphate AldolaseRecombinant ProteinsZinc

Identifiers

PMID27733232
PMCPMC5346313
OpenAlexW2553116735

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.