Evidence map›Paper›PMID 27732952›Full record

ArticleOncotarget2016

ZSCAN5B and primate-specific paralogs bind RNA polymerase III genes and extra-TFIIIC (ETC) sites to modulate mitotic progression.

Younguk Sun, Huimin Zhang, Majid Kazemian, Joseph M Troy, Christopher Seward, Xiaochen Lu, Lisa Stubbs

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.2field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Younguk SunInstitute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
Huimin ZhangInstitute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
Majid KazemianInstitute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
Joseph M TroyInstitute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
Christopher SewardInstitute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
Xiaochen LuInstitute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
Lisa StubbsInstitute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
University of Illinois Urbana-Champaign · USNational Institutes of Health · US

Funding

Determining gene targets and pathways for primate-specific zinc finger proteinsR01GM078368 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI STUBBS, LISA · 2007 to 2010
$2.0M
NIGMS NIH HHS R01 GM078368
6 · The paper itself

Abstract

Mammalian genomes contain hundreds of genes transcribed by RNA Polymerase III (Pol III), encoding noncoding RNAs and especially the tRNAs specialized to carry specific amino acids to the ribosome for protein synthesis. In addition to this well-known function, tRNAs and their genes (tDNAs) serve a variety of other critical cellular functions. For example, tRNAs and other Pol III transcripts can be cleaved to yield small RNAs with potent regulatory activities. Furthermore, from yeast to mammals, active tDNAs and related "extra-TFIIIC" (ETC) loci provide the DNA scaffolds for the most ancient known mechanism of three-dimensional chromatin architecture. Here we identify the ZSCAN5 TF family - including mammalian ZSCAN5B and its primate-specific paralogs - as proteins that occupy mammalian Pol III promoters and ETC sites. We show that ZSCAN5B binds with high specificity to a conserved subset of Pol III genes in human and mouse. Furthermore, primate-specific ZSCAN5A and ZSCAN5D also bind Pol III genes, although ZSCAN5D preferentially localizes to MIR SINE- and LINE2-associated ETC sites. ZSCAN5 genes are expressed in proliferating cell populations and are cell-cycle regulated, and siRNA knockdown experiments suggested a cooperative role in regulation of mitotic progression. Consistent with this prediction, ZSCAN5A knockdown led to increasing numbers of cells in mitosis and the appearance of cells. Together, these data implicate the role of ZSCAN5 genes in regulation of Pol III genes and nearby Pol II loci, ultimately influencing cell cycle progression and differentiation in a variety of tissues.

Indexed as

AnimalsCell CycleChromatinDisease ProgressionFemaleHEK293 CellsHumansMiceMice, Inbred C57BLMitosisRNA Polymerase IIITranscription Factors, TFIIITranscription Factor TFIIICTranscription, GeneticTransfectionChromatinRNA Polymerase IIITranscription Factors, TFIIITranscription Factor TFIIICcell cyclechromatin architectureprimate-specific duplicationRNA Polymerase III transcriptionzinc finger transcription factor

Identifiers

PMID27732952
PMCPMC5340127
OpenAlexW2528333164

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.