Evidence map›Paper›PMID 27732583›Full record

ArticleNature2016

Synchronous long-term oscillations in a synthetic gene circuit.

Laurent Potvin-Trottier, Nathan D Lord, Glenn Vinnicombe, Johan Paulsson

Abstract read
In one paragraph

Article in Nature, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 124 papers.

0numbers the graph read from it
0cells of the map it votes in
124citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

124 citing papers in PubMed.

  1. Article
  2. Fast, StreamlinedChemical & biomedical imaging · 2026
    Article
  3. Review
  4. Review
  5. Review
  6. Article
  7. Design of CRISPRi-Based Synthetic Gene Circuits in Bacteria.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Pulsatile basal gene expression as a fitness determinant in bacteria.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  15. Article
  16. Article
  17. Frontiers in cell and developmental biology · 2025
    Review
  18. Article
  19. Article
  20. Article

64 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Laurent Potvin-TrottierDepartment of Systems Biology, Harvard Medical School, 200 Longwood Avenue, Boston, Massachusetts 02115, USA.
Nathan D LordDepartment of Systems Biology, Harvard Medical School, 200 Longwood Avenue, Boston, Massachusetts 02115, USA.
Glenn VinnicombeDepartment of Engineering, University of Cambridge, Cambridge CB2 1PZ, UK.
Johan PaulssonDepartment of Systems Biology, Harvard Medical School, 200 Longwood Avenue, Boston, Massachusetts 02115, USA.

Funding

Limits and Trade-offs of Feedback ControlR01GM081563 · NIGMS · HARVARD MEDICAL SCHOOL · PI Johan Paulsson · 2008 to 2026
$4.9M
Stochastic Partitioning and Degradation of MacromoleculesR01GM095784 · NIGMS · HARVARD MEDICAL SCHOOL · PI PAULSSON, JOHAN · 2011 to 2014
$1.3M
National Institutes of Health GM081563National Institutes of Health GM095784NIGMS NIH HHS R01 GM081563NIGMS NIH HHS R01 GM095784
6 · The paper itself

Abstract

Synthetically engineered genetic circuits can perform a wide variety of tasks but are generally less accurate than natural systems. Here we revisit the first synthetic genetic oscillator, the repressilator, and modify it using principles from stochastic chemistry in single cells. Specifically, we sought to reduce error propagation and information losses, not by adding control loops, but by simply removing existing features. We show that this modification created highly regular and robust oscillations. Furthermore, some streamlined circuits kept 14 generation periods over a range of growth conditions and kept phase for hundreds of generations in single cells, allowing cells in flasks and colonies to oscillate synchronously without any coupling between them. Our results suggest that even the simplest synthetic genetic networks can achieve a precision that rivals natural systems, and emphasize the importance of noise analyses for circuit design in synthetic biology.

Indexed as

Gene Expression Regulation, BacterialGenetic EngineeringModels, GeneticBiological ClocksEscherichia coliGene Regulatory NetworksGenes, SyntheticResearch DesignSynthetic Biology

Identifiers

PMID27732583
PMCPMC5637407

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.