Evidence map›Paper›PMID 27731797›Full record

ArticleeLife2016

Insights into HIV-1 proviral transcription from integrative structure and dynamics of the Tat:AFF4:P-TEFb:TAR complex.

Ursula Schulze-Gahmen, Ignacia Echeverria, Goran Stjepanovic, Yun Bai, Huasong Lu, Dina Schneidman-Duhovny, Jennifer A Doudna, Qiang Zhou, Andrej Sali, James H Hurley

Open access · goldAbstract read
In one paragraph

Article in eLife, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
  2. Structural basis for P-TEFb association with BRD4.bioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Review
  9. Review
  10. Small-Angle X-Ray Scattering for Macromolecular Complexes.Advances in experimental medicine and biology · 2024
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Structural advances in transcription elongation.Current opinion in structural biology · 2022
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. AFF1 acetylation by p300 temporally inhibits transcription during genotoxic stress response.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Ursula Schulze-GahmenDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.
Ignacia EcheverriaDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, United States.ORCID 0000-0003-4717-1467
Goran StjepanovicDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.ORCID 0000-0002-4841-9949
Yun BaiDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.
Huasong LuDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.
Dina Schneidman-DuhovnyDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, United States.
Jennifer A DoudnaDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.
Qiang ZhouDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.
Andrej SaliDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, United States.
James H HurleyDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.ORCID 0000-0001-5054-5445
QB3 · USUniversity of California, San Francisco · US

Funding

X-ray Screening and Rapid Structure DeterminationP50GM082250 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FRANKEL, ALAN D · 2007 to 2018
$48.8M
REGULATION OF TRANSCRIPTIONAL ELONGATION BY HIV1 TATR01AI041757 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI ZHOU, QIANG · 1997 to 2019
$6.6M
MINOS (Macromolecular Insights on Nucleic acids Optimized by Scattering)R01GM105404 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI TAINER, JOHN A. · 2012 to 2015
$2.1M
Tat cofactors and control of HIV-1 latencyR01AI095057 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI ZHOU, QIANG · 2011 to 2015
$1.9M
NIAID NIH HHS R01 AI041757NIAID NIH HHS R01 AI095057NIGMS NIH HHS P50 GM082250NIGMS NIH HHS R01 GM105404
6 · The paper itself

Abstract

HIV-1 Tat hijacks the human superelongation complex (SEC) to promote proviral transcription. Here we report the 5.9 Å structure of HIV-1 TAR in complex with HIV-1 Tat and human AFF4, CDK9, and CycT1. The TAR central loop contacts the CycT1 Tat-TAR recognition motif (TRM) and the second Tat Zn

Indexed as

HIV Long Terminal RepeatCyclin-Dependent Kinase 9Cyclin TDeuterium Exchange MeasurementDNA, ViralHIV-1HumansMagnetic Resonance SpectroscopyModels, MolecularProvirusesRepressor ProteinsScattering, Small Angletat Gene Products, Human Immunodeficiency VirusTranscriptional Elongation FactorsTranscription, GeneticAFF4 protein, humanCCNT1 protein, humanCDK9 protein, humanCyclin-Dependent Kinase 9Cyclin TDNA, ViralRepressor Proteinstat Gene Products, Human Immunodeficiency VirusTranscriptional Elongation FactorsbiochemistrybiophysicsHDXintegrative modelingSAXSSHAPEstructural biologyvirusX-ray crystallography

Identifiers

PMID27731797
PMCPMC5072841
OpenAlexW2530804451

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.