Evidence map›Paper›PMID 27731335›Full record

ArticleThe Journal of antibiotics2017

Amide compound synthesis by adenylation domain of bacillibactin synthetase.

Tomoko Abe, Yoshiteru Hashimoto, Sayaka Sugimoto, Kenta Kobayashi, Takuto Kumano, Michihiko Kobayashi

Open access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in The Journal of antibiotics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 15 citations in OpenAlex.

  1. NewSynthetic and systems biotechnology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Tomoko AbeInstitute of Applied Biochemistry and Graduate School of Life and Environmental Sciences, The University of Tsukuba, Ibaraki, Japan.
Yoshiteru HashimotoInstitute of Applied Biochemistry and Graduate School of Life and Environmental Sciences, The University of Tsukuba, Ibaraki, Japan.
Sayaka SugimotoInstitute of Applied Biochemistry and Graduate School of Life and Environmental Sciences, The University of Tsukuba, Ibaraki, Japan.
Kenta KobayashiDivision of Life Science and Engineering, School of Science and Engineering, Tokyo Denki University, Saitama, Japan.
Takuto KumanoInstitute of Applied Biochemistry and Graduate School of Life and Environmental Sciences, The University of Tsukuba, Ibaraki, Japan.
Michihiko KobayashiInstitute of Applied Biochemistry and Graduate School of Life and Environmental Sciences, The University of Tsukuba, Ibaraki, Japan.
Institute of Applied Biochemistry · JPUniversity of Tsukuba · JPTokyo Denki University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The adenylation domain of nonribosomal peptide synthetase (NRPS) is responsible for the selective substrate recognition and its activation (as an acyl-O-AMP intermediate) during ATP consumption. DhbE, a stand-alone adenylation domain, acts on an aromatic acid, 2,3-dihydroxybenzoic acid (DHB). This activation is the initial step of the synthesis of bacillibactin that is a high-affinity small-molecule iron chelator also termed siderophore. Subsequently, the activated DHB is transferred and attached covalently to a peptidyl carrier protein domain via a thioester bond. Adenylation domains belong to the superfamily of adenylate-forming enzymes including acetyl-CoA synthetase, acyl-CoA synthetase and firefly luciferase. We previously reported a novel N-acylation reaction for an acyl-CoA synthetase (AcsA) that originally catalyzes the formation of a thioester bond between an acid and CoA, yielding acyl-CoA. This novel reaction was also confirmed for acetyl-CoA synthetase and firefly luciferase, but not yet for an adenylation domain. Here, we for the first time demonstrated the synthesis of N-acyl-L-cysteine by a stand-alone adenylation domain, DhbE. When DHB and L-cysteine were used as substrates of DhbE, N-DHB-L-cysteine was formed. A V

Indexed as

Acetate-CoA LigaseAcylationAdenineAmidesBenzoic AcidCoenzyme A LigasesCysteineEscherichia coliKineticsLigasesLuciferasesOligopeptidesSubstrate SpecificityAcetate-CoA LigaseAdenineAmidesbacillibactinBenzoic AcidCoenzyme A LigasesCysteineLigasesLuciferasesOligopeptides

Identifiers

PMID27731335
OpenAlexW2530291869

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.