Evidence map›Paper›PMID 27729457›Full record

ArticleThe EMBO journal2016

Molecular basis for cytoplasmic RNA surveillance by uridylation-triggered decay in Drosophila.

Madalena M Reimão-Pinto, Raphael A Manzenreither, Thomas R Burkard, Pawel Sledz, Martin Jinek, Karl Mechtler, Stefan L Ameres

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 54 citations in OpenAlex.

  1. Article
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  3. Review
  4. Article
  5. Article
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  8. Article
  9. Regulation of RNA stability at the 3' end.Biological chemistry · 2021
    Review
  10. A neural mNature communications · 2021
    Article
  11. Review
  12. Article
  13. Article
  14. Structure-function analysis of microRNA 3'-end trimming by Nibbler.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  15. Review
  16. Article
  17. Article
  18. RNA Exosomes and Their Cofactors.Methods in molecular biology (Clifton, N.J.) · 2020
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Madalena M Reimão-PintoInstitute of Molecular Biotechnology, IMBA, Vienna Biocenter Campus (VBC), Vienna, Austria.
Raphael A ManzenreitherInstitute of Molecular Biotechnology, IMBA, Vienna Biocenter Campus (VBC), Vienna, Austria.
Thomas R BurkardInstitute of Molecular Biotechnology, IMBA, Vienna Biocenter Campus (VBC), Vienna, Austria.
Pawel SledzDepartment of Biochemistry, University of Zurich, Zurich, Switzerland.
Martin JinekDepartment of Biochemistry, University of Zurich, Zurich, Switzerland.
Karl MechtlerInstitute of Molecular Biotechnology, IMBA, Vienna Biocenter Campus (VBC), Vienna, Austria.ORCID 0000-0002-3392-9946
Stefan L AmeresInstitute of Molecular Biotechnology, IMBA, Vienna Biocenter Campus (VBC), Vienna, Austria stefan.ameres@imba.oeaw.ac.at.ORCID 0000-0002-8248-3098
Institute of Molecular Biotechnology · ATUniversity of Zurich · CH

Funding

Austrian Science Fund FWF F 4322Austrian Science Fund FWF J 2832Austrian Science Fund FWF Y 733European Research Council 337284European Research Council 338252
6 · The paper itself

Abstract

The posttranscriptional addition of nucleotides to the 3' end of RNA regulates the maturation, function, and stability of RNA species in all domains of life. Here, we show that in flies, 3' terminal RNA uridylation triggers the processive, 3'-to-5' exoribonucleolytic decay via the RNase II/R enzyme CG16940, a homolog of the human Perlman syndrome exoribonuclease Dis3l2. Together with the TUTase Tailor, dmDis3l2 forms the cytoplasmic, terminal RNA uridylation-mediated processing (TRUMP) complex that functionally cooperates in the degradation of structured RNA RNA immunoprecipitation and high-throughput sequencing reveals a variety of TRUMP complex substrates, including abundant non-coding RNA, such as 5S rRNA, tRNA, snRNA, snoRNA, and the essential RNase MRP Based on genetic and biochemical evidence, we propose a key function of the TRUMP complex in the cytoplasmic quality control of RNA polymerase III transcripts. Together with high-throughput biochemical characterization of dmDis3l2 and bacterial RNase R, our results imply a conserved molecular function of RNase II/R enzymes as "readers" of destabilizing posttranscriptional marks-uridylation in eukaryotes and adenylation in prokaryotes-that play important roles in RNA surveillance.

Indexed as

RNA Processing, Post-TranscriptionalRNA StabilityAnimalsCell LineCytoplasmDrosophilaExoribonucleasesexoribonuclease IIExoribonucleasesDis3l2exoribonucleaseRNA decayRNA surveillanceuridylation

Identifiers

PMID27729457
PMCPMC5109242
OpenAlexW2531691678

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.