Evidence map›Paper›PMID 27729406›Full record

ArticleDevelopment (Cambridge, England)2016

A reporter model to visualize imprinting stability at the Dlk1 locus during mouse development and in pluripotent cells.

Emily Swanzey, Matthias Stadtfeld

Open access · hybridAbstract read
In one paragraph

Article in Development (Cambridge, England), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.5field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
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  7. Review
  8. Adipocyte dedifferentiation in health and diseases.Clinical science (London, England : 1979) · 2019
    Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Emily SwanzeyThe Helen L. and Martin S. Kimmel Center for Biology and Medicine, Skirball Institute of Biomolecular Medicine, Department of Cell Biology, NYU School of Medicine, New York, NY 10016, USA.
Matthias StadtfeldThe Helen L. and Martin S. Kimmel Center for Biology and Medicine, Skirball Institute of Biomolecular Medicine, Department of Cell Biology, NYU School of Medicine, New York, NY 10016, USA matthias.stadtfeld@med.nyu.edu.ORCID 0000-0002-5852-9906
New York University · US

Funding

Maintenance of epigenetic integrity during nuclear reprogrammingR01GM111852 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI STADTFELD, MATTHIAS · 2014 to 2018
$1.6M
Transgenic models to investigate imprinted gene expression in somatic tissueR21HD079883 · NICHD · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI STADTFELD, MATTHIAS · 2013 to 2013
$170k
NICHD NIH HHS R21 HD079883NIGMS NIH HHS R01 GM111852
6 · The paper itself

Abstract

Genomic imprinting results in the monoallelic expression of genes that encode important regulators of growth and proliferation. Dysregulation of imprinted genes, such as those within the Dlk1-Dio3 locus, is associated with developmental syndromes and specific diseases. Our ability to interrogate causes of imprinting instability has been hindered by the absence of suitable model systems. Here, we describe a Dlk1 knock-in reporter mouse that enables single-cell visualization of allele-specific expression and prospective isolation of cells, simultaneously. We show that this 'imprinting reporter mouse' can be used to detect tissue-specific Dlk1 expression patterns in developing embryos. We also apply this system to pluripotent cell culture and demonstrate that it faithfully indicates DNA methylation changes induced upon cellular reprogramming. Finally, the reporter system reveals the role of elevated oxygen levels in eroding imprinted Dlk1 expression during prolonged culture and in vitro differentiation. The possibility to study allele-specific expression in different contexts makes our reporter system a useful tool to dissect the regulation of genomic imprinting in normal development and disease.

Indexed as

Genes, ReporterGenomic ImprintingAnimalsCalcium-Binding ProteinsCell Culture TechniquesCell DifferentiationCells, CulturedEmbryo, MammalianEmbryonic DevelopmentFemaleGenetic LociGenomic InstabilityIntercellular Signaling Peptides and ProteinsMaleMiceMice, Inbred C57BLCalcium-Binding ProteinsDlk1 protein, mouseIntercellular Signaling Peptides and ProteinsOxygenAllele-specific expressionDlk1DNA methylationFluorescent reporterGenomic imprintingPluripotency

Identifiers

PMID27729406
PMCPMC5117214
OpenAlexW2530083328

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.