Evidence map›Paper›PMID 27725636›Full record

ArticleNature communications2016

Human acid sphingomyelinase structures provide insight to molecular basis of Niemann-Pick disease.

Yan-Feng Zhou, Matthew C Metcalf, Scott C Garman, Tim Edmunds, Huawei Qiu, Ronnie R Wei

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Theoretical Study of Sphingomyelinases fromPathogens (Basel, Switzerland) · 2025
    Article
  6. Article
  7. Human Saposin B Ligand Binding and Presentation to α-Galactosidase A.bioRxiv : the preprint server for biology · 2024
    Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Discovery of a dual-action small molecule that improves neuropathological features of Alzheimer's disease mice.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  15. New Molecular Targets for Antidepressant Drugs.Pharmaceuticals (Basel, Switzerland) · 2021
    Review
  16. Review
  17. Article
  18. Review
  19. Article
  20. Molecular models should not be published without the corresponding atomic coordinates.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Yan-Feng ZhouProtein Engineering Department, Biologics Research, Sanofi, Framingham, Massachusetts 01701, USA.
Matthew C MetcalfDepartment of Biochemistry &Molecular Biology, University of Massachusetts Amherst, Amherst, Massachusetts 01003, USA.
Scott C GarmanDepartment of Biochemistry &Molecular Biology, University of Massachusetts Amherst, Amherst, Massachusetts 01003, USA.
Tim EdmundsProtein Engineering Department, Biologics Research, Sanofi, Framingham, Massachusetts 01701, USA.
Huawei QiuProtein Engineering Department, Biologics Research, Sanofi, Framingham, Massachusetts 01701, USA.
Ronnie R WeiProtein Engineering Department, Biologics Research, Sanofi, Framingham, Massachusetts 01701, USA.
US Biologic (United States) · USUniversity of Massachusetts Amherst · US

Funding

Structural Studies of Lysosomal Storage DiseasesR01DK076877 · NIDDK · UNIVERSITY OF MASSACHUSETTS AMHERST · PI GARMAN, SCOTT C. · 2007 to 2021
$4.3M
NIDDK NIH HHS R01 DK076877
6 · The paper itself

Abstract

Acid sphingomyelinase (ASM) hydrolyzes sphingomyelin to ceramide and phosphocholine, essential components of myelin in neurons. Genetic alterations in ASM lead to ASM deficiency (ASMD) and have been linked to Niemann-Pick disease types A and B. Olipudase alfa, a recombinant form of human ASM, is being developed as enzyme replacement therapy to treat the non-neurological manifestations of ASMD. Here we present the human ASM holoenzyme and product bound structures encompassing all of the functional domains. The catalytic domain has a metallophosphatase fold, and two zinc ions and one reaction product phosphocholine are identified in a histidine-rich active site. The structures reveal the underlying catalytic mechanism, in which two zinc ions activate a water molecule for nucleophilic attack of the phosphodiester bond. Docking of sphingomyelin provides a model that allows insight into the selectivity of the enzyme and how the ASM domains collaborate to complete hydrolysis. Mapping of known mutations provides a basic understanding on correlations between enzyme dysfunction and phenotypes observed in ASMD patients.

Indexed as

Amino Acid SequenceBinding SitesCatalytic DomainCrystallography, X-RayHEK293 CellsHumansModels, MolecularMutationNiemann-Pick DiseasesPhosphorylcholineProlineProtein DomainsSaposinsSphingomyelin PhosphodiesteraseSubstrate SpecificityZincPhosphorylcholineProlineSaposinsSphingomyelin PhosphodiesteraseZinc

Identifiers

PMID27725636
PMCPMC5062611
OpenAlexW2530806066

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.