Evidence map›Paper›PMID 27724855›Full record

ArticleBMC microbiology2016

DNA-based culture-independent analysis detects the presence of group a streptococcus in throat samples from healthy adults in Japan.

Tejaswini Kulkarni, Chihiro Aikawa, Takashi Nozawa, Kazunori Murase, Fumito Maruyama, Ichiro Nakagawa

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact, top 85% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 11 citations in OpenAlex.

  1. Trial
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Tejaswini KulkarniDepartment of Molecular Craniofacial Embryology, Graduate School of Medical and Dental Sciences, Tokyo Medical and Dental University, Tokyo, 113-8510, Japan.
Chihiro AikawaDepartment of Microbiology, Graduate School of Medicine, Kyoto University, Kyoto, 606-8501, Japan.
Takashi NozawaDepartment of Microbiology, Graduate School of Medicine, Kyoto University, Kyoto, 606-8501, Japan.
Kazunori MuraseDepartment of Microbiology, Graduate School of Medicine, Kyoto University, Kyoto, 606-8501, Japan.
Fumito MaruyamaDepartment of Microbiology, Graduate School of Medicine, Kyoto University, Kyoto, 606-8501, Japan. maruyama.fumito.5e@kyoto-u.ac.jp.ORCID 0000-0003-2347-616X
Ichiro NakagawaDepartment of Microbiology, Graduate School of Medicine, Kyoto University, Kyoto, 606-8501, Japan.
Kyoto University · JPTokyo Medical and Dental University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundGroup A Streptococcus (GAS; Streptococcus pyogenes) causes a range of mild to severe infections in humans. It can also colonize healthy persons asymptomatically. Therefore, it is important to study GAS carriage in healthy populations, as carriage of it might lead to subsequent disease manifestation, clonal spread in the community, and/or diversification of the organism. Throat swab culture is the gold standard method for GAS detection. Advanced culture-independent methods provide rapid and efficient detection of microorganisms directly from clinical samples. We investigated the presence of GAS in throat swab samples from healthy adults in Japan using culture-dependent and culture-independent methods.

resultsTwo throat swab samples were collected from 148 healthy volunteers. One was cultured on selective medium, while total DNA extracted from the other was polymerase chain reaction (PCR) amplified with two GAS-specific primer pairs: one was a newly designed 16S rRNA-specific primer pair, the other a previously described V-Na

conclusionsOur results suggest that culture-independent methods should be considered for profiling GAS in the healthy hosts, with a view to obtaining better understanding of these organisms. The GAS-specific primers (16S rRNA and V-Na

Indexed as

AdultBacterial ProteinsBacterial Typing TechniquesDNA, BacterialDNA PrimersGenotypeHumansJapanMiddle AgedMolecular TypingPharynxPolymerase Chain ReactionRNA, Ribosomal, 16SSerotypingStreptococcal InfectionsStreptococcus pyogenesBacterial ProteinsDNA, BacterialDNA PrimersRNA, Ribosomal, 16SAsymptomatic carriageCulture-independent detectionEmm-typeGroup A StreptococcusSpecies-specific primers

Identifiers

PMID27724855
PMCPMC5057481
OpenAlexW2531360370

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.