ArticlePloS one2016
Accuracy of Assignment of Atlantic Salmon (Salmo salar L.) to Rivers and Regions in Scotland and Northeast England Based on Single Nucleotide Polymorphism (SNP) Markers.
Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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Who cites it
14 citing papers in PubMed, 46 citations in OpenAlex.
- Genomic, morphological and migratory patterns in recovering Atlantic salmon populations.Aquatic sciences · 2026Article
- Article
- Article
- Leveraging the genetic diversity of trout in the rivers of the British Isles and northern France to understand the movements of sea trout (Evolutionary applications · 2024Article
- Single Nucleotide Polymorphism Markers with Applications in Conservation and Exploitation of Aquatic Natural Populations.Animals : an open access journal from MDPI · 2023Review
- A baseline for the genetic stock identification of Atlantic herring,Royal Society open science · 2022Article
- Distinguishing Between Nile Tilapia Strains Using a Low-Density Single-Nucleotide Polymorphism Panel.Frontiers in genetics · 2020Article
- Population genomics reveals a mismatch between management and biological units in green abalone (PeerJ · 2020Article
- Single nucleotide polymorphisms reveal a genetic cline across the north-east Atlantic and enable powerful population assignment in the European lobster.Evolutionary applications · 2019Article
- Inferring Atlantic salmon post-smolt migration patterns using genetic assignment.Royal Society open science · 2019Article
- Genetic diversity and structure in Arapaima gigas populations from Amazon and Araguaia-Tocantins river basins.BMC genetics · 2019Article
- Design and characterization of an 87k SNP genotyping array for Arctic charr (Salvelinus alpinus).PloS one · 2019Article
- Genomic variation underlying complex life-history traits revealed by genome sequencing in Chinook salmon.Proceedings. Biological sciences · 2018Article
- Range-wide parallel climate-associated genomic clines in Atlantic salmon.Royal Society open science · 2017Article
Corrections and comments
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Authors and funding
10 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Understanding the habitat use patterns of migratory fish, such as Atlantic salmon (Salmo salar L.), and the natural and anthropogenic impacts on them, is aided by the ability to identify individuals to their stock of origin. Presented here are the results of an analysis of informative single nucleotide polymorphic (SNP) markers for detecting genetic structuring in Atlantic salmon in Scotland and NE England and their ability to allow accurate genetic stock identification. 3,787 fish from 147 sites covering 27 rivers were screened at 5,568 SNP markers. In order to identify a cost-effective subset of SNPs, they were ranked according to their ability to differentiate between fish from different rivers. A panel of 288 SNPs was used to examine both individual assignments and mixed stock fisheries and eighteen assignment units were defined. The results improved greatly on previously available methods and, for the first time, fish caught in the marine environment can be confidently assigned to geographically coherent units within Scotland and NE England, including individual rivers. As such, this SNP panel has the potential to aid understanding of the various influences acting upon Atlantic salmon on their marine migrations, be they natural environmental variations and/or anthropogenic impacts, such as mixed stock fisheries and interactions with marine power generation installations.
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