Evidence map›Paper›PMID 27723767›Full record

ArticlePloS one2016

Effects of a Polymorphism of the Neuronal Amino Acid Transporter SLC6A15 Gene on Structural Integrity of White Matter Tracts in Major Depressive Disorder.

Sunyoung Choi, Kyu-Man Han, June Kang, Eunsoo Won, Hun Soo Chang, Woo Suk Tae, Kyu Ri Son, Su-Jin Kim, Min-Soo Lee, Byung-Joo Ham

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 3 pooled it
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 3 syntheses or guidelines pooled it, 47 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Imaging genetics paradigms in depression research: Systematic review and meta-analysis.Progress in neuro-psychopharmacology & biological psychiatry · 2018
    Pooled it
  4. Review
  5. Review
  6. Genetic underpinnings of brain structural connectome for young adults.Journal of the American Statistical Association · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Sunyoung ChoiDepartment of Brain and Cognitive Engineering, Korea University, Seoul, Republic of Korea.
Kyu-Man HanDepartment of Psychiatry, Korea University College of Medicine, Seoul, Republic of Korea.
June KangDepartment of Biomedical Sciences, Korea University College of Medicine, Seoul, South Korea.
Eunsoo WonDepartment of Psychiatry, Korea University College of Medicine, Seoul, Republic of Korea.
Hun Soo ChangDepartment of Medical Bioscience, Graduate school, Soonchunhyang University, Bucheon, South Korea.
Woo Suk TaeBrain Convergence Research Center, Korea University Anam Hospital, Seoul, South Korea.
Kyu Ri SonDepartment of Radiology, Anam Hospital, Korea University College of Medicine, Seoul, Republic of Korea.
Su-Jin KimDepartment of Emergency Medicine, College of Medicine, Korea University, Seoul, Republic of Korea.
Min-Soo LeeDepartment of Psychiatry, Korea University College of Medicine, Seoul, Republic of Korea.
Byung-Joo HamDepartment of Psychiatry, Korea University College of Medicine, Seoul, Republic of Korea.
Korea University · KRSoonchunhyang University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe SLC6A15 gene has been identified as a novel candidate gene for major depressive disorder (MDD). It is presumed to be involved in the pathophysiology of MDD through regulation of glutamate transmission in the brain. However, the involvement of this gene in microstructural changes in white matter (WM) tracts remains unclear. We aimed to investigate the influence of a polymorphism of this gene (rs1545853) on the structural integrity of WM tracts in the cortico-limbic network.

methodsEighty-six patients with MDD and 64 healthy controls underwent T1-weighted structural magnetic resonance imaging, including diffusion tensor imaging (DTI), and genotype analysis. We selected the genu of the corpus callosum, the uncinate fasciculus, cingulum, and fornix as regions of interest, and extracted fractional anisotropy (FA) values using the FMRIB Diffusion Toolbox software.

resultsFA values for the left parahippocampal cingulum (PHC) was significantly reduced in the patients with MDD compared to healthy control participants (p = 0.004). We also found that MDD patients with the A allele showed reduced FA values for the left PHC than did healthy controls with the A allele (p = 0.012). There was no significant difference in the FA value of left PHC for the comparison between the G homozygotes of MDD and healthy control group.

conclusionsWe observed an association between the risk allele of the SLC6A15 gene rs1545843 and the WM integrity of the PHC in MDD patients, which is known to play an important role in the neural circuit involved in emotion processing.

Indexed as

AllelesDiffusion Tensor ImagingPolymorphism, GeneticAdultAmino Acid Transport Systems, NeutralFemaleHumansMajor Depressive DisorderMaleMiddle AgedNerve Tissue ProteinsWhite MatterAmino Acid Transport Systems, NeutralNerve Tissue ProteinsSLC6A15 protein, human

Identifiers

PMID27723767
PMCPMC5056691
OpenAlexW2529981184

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.