Evidence map›Paper›PMID 27723756›Full record

ArticleNature genetics2016

Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.

Jun Wang, Louise B Thingholm, Jurgita Skiecevičienė, Philipp Rausch, Martin Kummen, Johannes R Hov, Frauke Degenhardt, Femke-Anouska Heinsen, Malte C Rühlemann, Silke Szymczak and 29 more

Abstract read
In one paragraph

Article in Nature genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 368 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
368citing papers in PubMed, 4 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

368 citing papers in PubMed, 4 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Trial
  6. Trial
  7. Trial
  8. Trial
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Article

308 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

39 authors.

Jun WangEvolutionary Genomics, Max Planck Institute for Evolutionary Biology, Plön, Germany.
Louise B ThingholmInstitute of Clinical Molecular Biology, Christian Albrechts University of Kiel, Kiel, Germany.
Jurgita SkiecevičienėInstitute of Clinical Molecular Biology, Christian Albrechts University of Kiel, Kiel, Germany.
Philipp RauschEvolutionary Genomics, Max Planck Institute for Evolutionary Biology, Plön, Germany.
Martin KummenNorwegian PSC Research Center, Division of Surgery, Inflammatory Medicine and Transplantation, Oslo, Norway.
Johannes R HovNorwegian PSC Research Center, Division of Surgery, Inflammatory Medicine and Transplantation, Oslo, Norway.
Frauke DegenhardtInstitute of Clinical Molecular Biology, Christian Albrechts University of Kiel, Kiel, Germany.
Femke-Anouska HeinsenInstitute of Clinical Molecular Biology, Christian Albrechts University of Kiel, Kiel, Germany.ORCID 0000-0003-3652-6402
Malte C RühlemannInstitute of Clinical Molecular Biology, Christian Albrechts University of Kiel, Kiel, Germany.ORCID 0000-0002-0685-0052
Silke SzymczakInstitute of Clinical Molecular Biology, Christian Albrechts University of Kiel, Kiel, Germany.
Kristian HolmNorwegian PSC Research Center, Division of Surgery, Inflammatory Medicine and Transplantation, Oslo, Norway.
Tönu EskoEstonian Genome Center, University of Tartu, Tartu, Estonia.ORCID 0000-0003-1982-6569
Jun SunDivision of Gastroenterology and Hepatology, Department of Medicine, University of Illinois at Chicago, Chicago, Illinois, USA.ORCID 0000-0001-7465-3133
Mihaela Pricop-JeckstadtDepartment of Nutrition and Food Sciences, Nutritional Epidemiology, University of Bonn, Bonn, Germany.
Samer Al-DuryDepartment of Molecular and Clinical Medicine, Institute of Medicine, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden.
Pavol BohovDepartment of Clinical Science, University of Bergen, Bergen, Norway.
Jörn BethuneInstitute of Clinical Molecular Biology, Christian Albrechts University of Kiel, Kiel, Germany.ORCID 0000-0002-6919-2595
Felix SommerInstitute of Clinical Molecular Biology, Christian Albrechts University of Kiel, Kiel, Germany.
David EllinghausInstitute of Clinical Molecular Biology, Christian Albrechts University of Kiel, Kiel, Germany.
Rolf K BergeDepartment of Clinical Science, University of Bergen, Bergen, Norway.
Matthias HübenthalInstitute of Clinical Molecular Biology, Christian Albrechts University of Kiel, Kiel, Germany.ORCID 0000-0002-5956-3006
Manja KochInstitute of Epidemiology, Christian Albrechts University of Kiel, Kiel, Germany.
Karin SchwarzInstitute of Human Nutrition and Food Science, University of Kiel, Kiel, Germany.
Gerald RimbachInstitute of Human Nutrition and Food Science, University of Kiel, Kiel, Germany.
Patricia HübbeInstitute of Human Nutrition and Food Science, University of Kiel, Kiel, Germany.
Wei-Hung PanInstitute of Clinical Molecular Biology, Christian Albrechts University of Kiel, Kiel, Germany.
Raheleh Sheibani-TezerjiInstitute of Clinical Molecular Biology, Christian Albrechts University of Kiel, Kiel, Germany.
Robert HäslerInstitute of Clinical Molecular Biology, Christian Albrechts University of Kiel, Kiel, Germany.
Philipp RosenstielInstitute of Clinical Molecular Biology, Christian Albrechts University of Kiel, Kiel, Germany.
Mauro D'AmatoBioDonostia Health Research Institute, San Sebastian and Ikerbasque, Basque Foundation for Science, Bilbao, Spain.
Katja Cloppenborg-SchmidtInstitute for Experimental Medicine, Christian Albrechts University of Kiel, Kiel, Germany.
Sven KünzelEvolutionary Genomics, Max Planck Institute for Evolutionary Biology, Plön, Germany.
Matthias LaudesDepartment of Internal Medicine I, University Hospital S.-H. (UKSH, Campus Kiel), Kiel, Germany.
Hanns-Ulrich MarschallDepartment of Molecular and Clinical Medicine, Institute of Medicine, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden.
Wolfgang LiebInstitute of Epidemiology, Christian Albrechts University of Kiel, Kiel, Germany.
Ute NöthlingsDepartment of Nutrition and Food Sciences, Nutritional Epidemiology, University of Bonn, Bonn, Germany.
Tom H KarlsenNorwegian PSC Research Center, Division of Surgery, Inflammatory Medicine and Transplantation, Oslo, Norway.
John F BainesEvolutionary Genomics, Max Planck Institute for Evolutionary Biology, Plön, Germany.
Andre FrankeInstitute of Clinical Molecular Biology, Christian Albrechts University of Kiel, Kiel, Germany.

Funding

Vitamin D Receptor Regulation of Microbiota in Intestinal EpitheliaR01DK105118 · NIDDK · UNIVERSITY OF ILLINOIS AT CHICAGO · PI SUN, JUN · 2016 to 2020
$1.8M
Enteric bacterial modulation of Vitamin D Receptor signaling in colitisR03DK089010 · NIDDK · UNIVERSITY OF ROCHESTER · PI SUN, JUN · 2010 to 2011
$154k
NIDDK NIH HHS R01 DK105118NIDDK NIH HHS R03 DK089010
6 · The paper itself

Abstract

Human gut microbiota is an important determinant for health and disease, and recent studies emphasize the numerous factors shaping its diversity. Here we performed a genome-wide association study (GWAS) of the gut microbiota using two cohorts from northern Germany totaling 1,812 individuals. Comprehensively controlling for diet and non-genetic parameters, we identify genome-wide significant associations for overall microbial variation and individual taxa at multiple genetic loci, including the VDR gene (encoding vitamin D receptor). We observe significant shifts in the microbiota of Vdr

Indexed as

Gastrointestinal MicrobiomeAdultAgedAged, 80 and overAnimalsBacteriaCohort StudiesDietFemaleGenome-Wide Association StudyHumansMaleMiceMice, KnockoutMiddle AgedPolymorphism, Single NucleotideReceptors, CalcitriolVDR protein, human

Identifiers

PMID27723756
PMCPMC5626933

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.