Evidence map›Paper›PMID 27723752›Full record

ArticleNature methods2016

Plasmid-based one-pot saturation mutagenesis.

Emily E Wrenbeck, Justin R Klesmith, James A Stapleton, Adebola Adeniran, Keith E J Tyo, Timothy A Whitehead

Abstract read
In one paragraph

Article in Nature methods, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 109 papers.

0numbers the graph read from it
0cells of the map it votes in
109citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

109 citing papers in PubMed.

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  13. Mutational scanning of TnpB reveals latent activity for genome editing.bioRxiv : the preprint server for biology · 2025
    Article
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49 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Emily E WrenbeckDepartment of Chemical Engineering and Materials Science, Michigan State University, East Lansing, Michigan, USA.ORCID http://orcid.org/0000-0003-0096-0768
Justin R KlesmithDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan, USA.
James A StapletonDepartment of Chemical Engineering and Materials Science, Michigan State University, East Lansing, Michigan, USA.
Adebola AdeniranDepartment of Chemical and Biological Engineering, Northwestern University, Evanston, Illinois, USA.
Keith E J TyoDepartment of Chemical and Biological Engineering, Northwestern University, Evanston, Illinois, USA.
Timothy A WhiteheadDepartment of Chemical Engineering and Materials Science, Michigan State University, East Lansing, Michigan, USA.

Funding

Plant Biotechnology for Health and SustainabilityT32GM110523 · NIGMS · MICHIGAN STATE UNIVERSITY · PI LAST, ROBERT LOUIS · 2014 to 2023
$2.2M
NIGMS NIH HHS T32 GM110523
6 · The paper itself

Abstract

Deep mutational scanning is a foundational tool for addressing the functional consequences of large numbers of mutants, but a more efficient and accessible method for construction of user-defined mutagenesis libraries is needed. Here we present nicking mutagenesis, a robust, single-day, one-pot saturation mutagenesis method performed on routinely prepped plasmid dsDNA. The method can be used to produce comprehensive or single- or multi-site saturation mutagenesis libraries.

Indexed as

Amidohydrolasesbeta-LactamasesDNADNA Breaks, Single-StrandedDNA Restriction EnzymesEscherichia coliGene LibraryGenes, BacterialMutagenesis, Site-DirectedMutationPlasmidsPseudomonas aeruginosaSequence Analysis, DNAamidaseAmidohydrolasesbeta-LactamasesDNADNA Restriction Enzymes

Identifiers

PMID27723752
PMCPMC5666567

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.