Evidence map›Paper›PMID 27723724›Full record

ArticleNature microbiology2016

Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes.

Alexandra Moura, Alexis Criscuolo, Hannes Pouseele, Mylène M Maury, Alexandre Leclercq, Cheryl Tarr, Jonas T Björkman, Timothy Dallman, Aleisha Reimer, Vincent Enouf and 20 more

Open access · greenAbstract read
In one paragraph

Article in Nature microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 396 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
396citing papers in PubMed, 1 pooled it
60.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

396 citing papers in PubMed, 1 synthesis or guideline pooled it, 673 citations in OpenAlex.

  1. Pooled it
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336 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors at 8 institutions in 5 countries.

Alexandra MouraNational Reference Centre and World Health Organization Collaborating Center for Listeria, Institut Pasteur, 75724 Paris, France.
Alexis CriscuoloInstitut Pasteur-Hub Bioinformatique et Biostatistique-C3BI, USR 3756 IP CNRS, 75724 Paris, France.
Hannes PouseeleApplied-Maths, 9830 Sint-Martens-Latem, Belgium.
Mylène M MauryNational Reference Centre and World Health Organization Collaborating Center for Listeria, Institut Pasteur, 75724 Paris, France.
Alexandre LeclercqNational Reference Centre and World Health Organization Collaborating Center for Listeria, Institut Pasteur, 75724 Paris, France.
Cheryl TarrCenters for Disease Control and Prevention, Atlanta, Georgia 30333, USA.
Jonas T BjörkmanStatens Serum Institut, 2300 Copenhagen, Denmark.ORCID http://orcid.org/0000-0001-6120-0864
Timothy DallmanPublic Health England, London NW9 5EQ, UK.
Aleisha ReimerPublic Health Agency of Canada, Winnipeg, Manitoba R3E 3R2, Canada.
Vincent EnoufPasteur International Bioresources network (PIBnet), Mutualized Microbiology Platform (P2M), Institut Pasteur, 75724 Paris, France.
Elise LarsonneurMicrobial Evolutionary Genomics Unit, Institut Pasteur, 75724 Paris, France.
Heather CarletonCenters for Disease Control and Prevention, Atlanta, Georgia 30333, USA.
Hélène Bracq-DieyeNational Reference Centre and World Health Organization Collaborating Center for Listeria, Institut Pasteur, 75724 Paris, France.
Lee S KatzCenters for Disease Control and Prevention, Atlanta, Georgia 30333, USA.
Louis JonesInstitut Pasteur-Hub Bioinformatique et Biostatistique-C3BI, USR 3756 IP CNRS, 75724 Paris, France.
Marie TouchonMicrobial Evolutionary Genomics Unit, Institut Pasteur, 75724 Paris, France.
Mathieu TourdjmanPublic Health France, 94415 Saint-Maurice, France.
Matthew WalkerPublic Health Agency of Canada, Winnipeg, Manitoba R3E 3R2, Canada.
Steven StroikaCenters for Disease Control and Prevention, Atlanta, Georgia 30333, USA.
Thomas CantinelliNational Reference Centre and World Health Organization Collaborating Center for Listeria, Institut Pasteur, 75724 Paris, France.
Viviane Chenal-FrancisqueNational Reference Centre and World Health Organization Collaborating Center for Listeria, Institut Pasteur, 75724 Paris, France.
Zuzana KucerovaCenters for Disease Control and Prevention, Atlanta, Georgia 30333, USA.
Eduardo P C RochaMicrobial Evolutionary Genomics Unit, Institut Pasteur, 75724 Paris, France.
Celine NadonPublic Health Agency of Canada, Winnipeg, Manitoba R3E 3R2, Canada.
Kathie GrantPublic Health England, London NW9 5EQ, UK.
Eva M NielsenStatens Serum Institut, 2300 Copenhagen, Denmark.
Bruno PotApplied-Maths, 9830 Sint-Martens-Latem, Belgium.
Peter Gerner-SmidtCenters for Disease Control and Prevention, Atlanta, Georgia 30333, USA.
Marc LecuitNational Reference Centre and World Health Organization Collaborating Center for Listeria, Institut Pasteur, 75724 Paris, France.ORCID http://orcid.org/0000-0002-4491-1063
Sylvain BrisseMicrobial Evolutionary Genomics Unit, Institut Pasteur, 75724 Paris, France.
Centre National de la Recherche Scientifique · FRCenters for Disease Control and Prevention · USInstitut Pasteur · FRPublic Health Agency of Canada · CAPublic Health England · GBStatens Serum Institut · DKDélégation Paris 5 · FRSanté Publique France · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Listeria monocytogenes (Lm) is a major human foodborne pathogen. Numerous Lm outbreaks have been reported worldwide and associated with a high case fatality rate, reinforcing the need for strongly coordinated surveillance and outbreak control. We developed a universally applicable genome-wide strain genotyping approach and investigated the population diversity of Lm using 1,696 isolates from diverse sources and geographical locations. We define, with unprecedented precision, the population structure of Lm, demonstrate the occurrence of international circulation of strains and reveal the extent of heterogeneity in virulence and stress resistance genomic features among clinical and food isolates. Using historical isolates, we show that the evolutionary rate of Lm from lineage I and lineage II is low (∼2.5 × 10

Indexed as

Epidemiological MonitoringGenome, BacterialGenetic VariationGenotyping TechniquesGlobal HealthHumansListeria monocytogenesListeriosisMolecular EpidemiologyPhylogeography

Identifiers

PMID27723724
PMCPMC8903085
OpenAlexW2530546106

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.