Evidence map›Paper›PMID 27722794›Full record

ArticleRheumatology international2016

Gene-gene interaction between CD40 and CD226 gene on systemic lupus erythematosus in the Chinese Han population.

Daqing Nie, Hongbo Li, Guixiu Yan, Zhengyi Wang, Zhaomin He, Wenyu Zhou

Abstract read
PubMed Publisher
In one paragraph

Article in Rheumatology international, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Increased Proportion of CD226Frontiers in immunology · 2021
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Daqing NieDepartment of Rheumatism in the Affiliated Hospital, Changchun University of Chinese Medicine, Changchun, 130000, Jilin, China.
Hongbo LiDepartment of Rheumatism in the Affiliated Hospital, Changchun University of Chinese Medicine, Changchun, 130000, Jilin, China.
Guixiu YanDepartment of Nursing, College of Humanities and Sciences, Northeast Normal University, Changchun, 130000, China.
Zhengyi WangCollege of Nursing and Health Science, Nanfang College, Sun Yat-Sen University, Guangzhou, China.
Zhaomin HeCollege of Nursing and Health Science, The University of Texas at Tylar, 3900 University Blvd, Tyler, TX, USA.
Wenyu ZhouDepartment of Urology and Rheumatism, The Central Hospital of Wuhan, No. 26 Shengli Street, Wuhan, 430014, Hubei, China. zhouwywy667@163.com.
Changchun University of Chinese Medicine · CNCentral Hospital of Wuhan · CNNortheast Normal University · CNSun Yat-sen University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The aim of the study is to investigate the impact of CD40 and CD226 gene single-nucleotide polymorphism (SNP) and additional gene-gene interaction on systemic lupus erythematosus (SLE) risk in Chinese Han populations. Three SNPs were selected for genotyping in the case-control study: rs4810485, rs763361, and rs3765456. Logistic regression was performed to investigate association between SNP within CD40 and CD226 and SLE. Generalized multifactor dimensionality reduction (GMDR) was used to analyze the interaction among three SNPs. Logistic regression analysis showed that SLE risk was significantly higher in carriers of T allele of rs4810485 in CD40 gene than those with GG genotype (GT+ TT vs GG), adjusted OR (95 % CI) 1.84 (1.40-2.29). In addition, we also found SLE risk was also significantly higher in carriers of rs763361 T allele within CD226 gene than those with CC genotype (CT+ TT vs CC), adjusted OR (95 % CI) 1.89 (1.38-2.13). GMDR analysis suggested a potential gene-gene interaction between rs4810485 and rs763361. Overall, cross-validation consistency of the two-locus model was 10/10, and the testing accuracy was 62.17 %. We also found that subjects with GT or TT of rs4810485 and CT or TT of rs763361 genotype have the highest SLE risk, compared with subjects with GG of rs4810485 and CC of rs763361 genotype, and OR (95 % CI) was 2.14 (1.67-3.08), after covariates adjustment. Our results support an important association of rs4810485 in CD40 gene and rs763361 in CD226 gene polymorphism, combined effect of rs4810485 and rs763361 with increased risk of SLE.

Indexed as

Epistasis, GeneticGenetic Predisposition to DiseasePolymorphism, Single NucleotideAdultAllelesAntigens, Differentiation, T-LymphocyteAsian PeopleCase-Control StudiesCD40 AntigensChinaFemaleGene FrequencyGenetic Association StudiesGenotypeHumansLupus Erythematosus, SystemicAntigens, Differentiation, T-LymphocyteCD40 AntigensT Lineage-Specific Activation Antigen 1CD226CD40InteractionPolymorphismSLE

Identifiers

PMID27722794
OpenAlexW2528497291

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.