Evidence map›Paper›PMID 27722032›Full record

ArticleJournal of genetic syndromes & gene therapy2016

PARP1 Differentially Interacts with Promoter region of

Vishakha Sharma, Sachchida Nand Pandey, Hunain Khawaja, Kristy J Brown, Yetrib Hathout, Yi-Wen Chen

Open access · bronzeAbstract read
In one paragraph

Article in Journal of genetic syndromes & gene therapy, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.7field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
  2. Green Cancer Prevention and Beyond.Cancer prevention research (Philadelphia, Pa.) · 2024
    Review
  3. Influence ofInternational journal of molecular sciences · 2023
    Review
  4. Article
  5. Review
  6. PARP-1-Associated Pathological Processes: Inhibition by Natural Polyphenols.International journal of molecular sciences · 2021
    Review
  7. Review
  8. Review
  9. Therapeutic Strategies Targeting DUX4 in FSHD.Journal of clinical medicine · 2020
    Review
  10. Journal of personalized medicine · 2020
    Review
  11. Article
  12. A Pediatric Review of Facioscapulohumeral Muscular Dystrophy.Journal of pediatric neurology : JPN · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Vishakha SharmaDepartment of Molecular Medicine, George Washington University, Washington DC, USA.
Sachchida Nand PandeyCenter for Genetic Medicine Research, Children's National Health System, Washington DC, USA.
Hunain KhawajaCenter for Genetic Medicine Research, Children's National Health System, Washington DC, USA.
Kristy J BrownCenter for Genetic Medicine Research, Children's National Health System, Washington DC, USA.
Yetrib HathoutCenter for Genetic Medicine Research, Children's National Health System, Washington DC, USA; Department of Integrative Systems Biology, George Washington University, Washington DC, USA.
Yi-Wen ChenCenter for Genetic Medicine Research, Children's National Health System, Washington DC, USA; Department of Integrative Systems Biology, George Washington University, Washington DC, USA.
Children's National · US

Funding

NEUROIMAGING COREP30HD040677 · NICHD · CHILDREN'S RESEARCH INSTITUTE · PI VITTORIO GALLO, VITTORIO GALLO VITTORIO GALLO · 2001 to 2015
$15.9M
NCMRR-DC Core Molecular & Functional Outcome Measures in Rehabilitation MedicineR24HD050846 · NICHD · CHILDREN'S RESEARCH INSTITUTE · PI KNOBLACH, SUSAN M · 2005 to 2014
$8.6M
CTSA INFRASTRUCTURE FOR PEDIATRIC RESEARCHUL1RR031988 · NCRR · CHILDREN'S RESEARCH INSTITUTE · PI JOSEPH, JILL G · 2010 to 2011
$8.2M
Molecular Pathphysiology of FSHD muscular dystrophy via genome-wide approachesR01AR052027 · NIAMS · CHILDREN'S RESEARCH INSTITUTE · PI CHEN, YI-WEN · 2007 to 2011
$2.2M
NCRR NIH HHS UL1 RR031988NIAMS NIH HHS R01 AR052027NICHD NIH HHS P30 HD040677NICHD NIH HHS R24 HD050846United States NIAMSUnited States NICHD
6 · The paper itself

Abstract

objectiveThe goal of the study is to identity proteins, which interact with the promoter region of double homeobox protein 4 (DUX4) gene known to be causative for the autosomal dominant disorder Facioscapulohumeral Muscular Dystrophy (FSHD).

methodsWe performed a DNA pull down assay coupled with mass spectrometry analysis to identify proteins that interact with a DUX4 promoter probe in Rhabdomyosarcomca (RD) cells. We selected the top ranked protein poly (ADP-ribose) polymerase 1 (PARP1) from our mass spectrometry data for further ChIP-qPCR validation using patients' myoblasts. We then treated FSHD myoblasts with PARP1 inhibitors to investigate the role of PARP1 in the FSHD myoblasts.

resultsIn our mass spectrometry analysis, PARP1 was found to be the top ranked protein interacting preferentially with the

conclusionOur results showed that PARP1 and DNMT1 interacted with

Indexed as

DUX4 GeneFacioscapulohumeral muscular dystrophyImmunoblottingMyoblast

Identifiers

PMID27722032
PMCPMC5051271
OpenAlexW2520764626

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.