ArticleScientific reports2016
Genomics-assisted characterization of a breeding collection of Apios americana, an edible tuberous legume.
Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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Who cites it
13 citing papers in PubMed.
- Chromosome-level haplotype-resolved genome assemblies and annotations of Apios americana and Apios priceana.Scientific data · 2026Article
- QTL mapping and key candidate gene identification of resistance to frogeye leaf spot (Frontiers in plant science · 2026Article
- Integration of GWAS and transcriptome and haplotype analyses to identify QTNs and candidate genes controlling oil content in soybean seeds.Scientific reports · 2025Article
- Basic proposal for evaluation of plant genetic resources to generate new crops.Frontiers in plant science · 2025Review
- Detecting QTL and Candidate Genes for Plant Height in SoybeanFrontiers in plant science · 2021Article
- Article
- Linkage Analysis and Multi-Locus Genome-Wide Association Studies Identify QTNs Controlling Soybean Plant Height.Frontiers in plant science · 2020Article
- Identification of QTNs Controlling 100-Seed Weight in Soybean Using Multilocus Genome-Wide Association Studies.Frontiers in genetics · 2020Article
- Quantitative Trait Locus Analysis of Protein and Oil Content in Response to Planting Density in Soybean (Frontiers in genetics · 2020Article
- Genomic Selection in Preliminary Yield Trials in a Winter Wheat Breeding Program.G3 (Bethesda, Md.) · 2018Article
- A transcriptome-SNP-derived linkage map of Apios americana (potato bean) provides insights about genome re-organization and synteny conservation in the phaseoloid legumes.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018Article
- Chemical Constituents from Apios americana and Their Inhibitory Activity on Tyrosinase.Molecules (Basel, Switzerland) · 2018Article
- Identification of QTNs Controlling Seed Protein Content in Soybean Using Multi-Locus Genome-Wide Association Studies.Frontiers in plant science · 2018Article
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Authors and funding
6 authors.
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No grant is acknowledged in the PubMed record.
Abstract
For species with potential as new crops, rapid improvement may be facilitated by new genomic methods. Apios (Apios americana Medik.), once a staple food source of Native American Indians, produces protein-rich tubers, tolerates a wide range of soils, and symbiotically fixes nitrogen. We report the first high-quality de novo transcriptome assembly, an expression atlas, and a set of 58,154 SNP and 39,609 gene expression markers (GEMs) for characterization of a breeding collection. Both SNPs and GEMs identify six genotypic clusters in the collection. Transcripts mapped to the Phaseolus vulgaris genome-another phaseoloid legume with the same chromosome number-provide provisional genetic locations for 46,852 SNPs. Linkage disequilibrium decays within 10 kb (based on the provisional genetic locations), consistent with outcrossing reproduction. SNPs and GEMs identify more than 21 marker-trait associations for at least 11 traits. This study demonstrates a holistic approach for mining plant collections to accelerate crop improvement.
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