Evidence map›Paper›PMID 27718339›Full record

ReviewBiotechnology progress2017

Recent advances in immobilization strategies for glycosidases.

Sercan Karav, Joshua L Cohen, Daniela Barile, Juliana Maria Leite Nobrega de Moura Bell

Open access · greenAbstract readReview
In one paragraph

Review in Biotechnology progress, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
5.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 36 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Immobilization of a Bifidobacterial Endo-Frontiers in bioengineering and biotechnology · 2022
    Article
  5. Article
  6. Immobilization of the Highly Active UDP-Glucose Pyrophosphorylase FromFrontiers in bioengineering and biotechnology · 2020
    Article
  7. Immobilized Cells ofMolecules (Basel, Switzerland) · 2018
    Article
  8. Immobilization of an Endo-β-Catalysts (Basel, Switzerland) · 2018
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Sercan KaravDepartment of Molecular Biology and Genetics, Canakkale 18 Mart University, Canakkale, Turkey.
Joshua L CohenDepartment of Food Science and Technology, University of California, One Shields Avenue, Davis, CA, 95616.
Daniela BarileDepartment of Food Science and Technology, University of California, One Shields Avenue, Davis, CA, 95616.
Juliana Maria Leite Nobrega de Moura BellDepartment of Food Science and Technology, University of California, One Shields Avenue, Davis, CA, 95616.
University of California, Davis · USÇanakkale Onsekiz Mart Üniversitesi · TR

Funding

Activation of probiotic bifidobacteria by milk glyansR01AT008759 · NCCIH · UNIVERSITY OF CALIFORNIA AT DAVIS · PI GERMAN, BRUCE, LEBRILLA, CARLITO B · 2014 to 2018
$4.2M
Training Program in Biomolecular TechnologyT32GM008799 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI LEACH, J. KENT · 2002 to 2016
$2.4M
Mechanism of Activation of Probiotic Bifidobacteria by Prebiotic Milk GlycansR01AT007079 · NCCIH · UNIVERSITY OF CALIFORNIA AT DAVIS · PI GERMAN, BRUCE, LEBRILLA, CARLITO B · 2012 to 2016
$2.2M
NCCIH NIH HHS R01 AT007079NCCIH NIH HHS R01 AT008759NIGMS NIH HHS T32 GM008799
6 · The paper itself

Abstract

Glycans play important biological roles in cell-to-cell interactions, protection against pathogens, as well as in proper protein folding and stability, and are thus interesting targets for scientists. Although their mechanisms of action have been widely investigated and hypothesized, their biological functions are not well understood due to the lack of deglycosylation methods for large-scale isolation of these compounds. Isolation of glycans in their native state is crucial for the investigation of their biological functions. However, current enzymatic and chemical deglycosylation techniques require harsh pretreatment and reaction conditions (high temperature and use of detergents) that hinder the isolation of native glycan structures. Indeed, the recent isolation of new endoglycosidases that are able to cleave a wider variety of linkages and efficiently hydrolyze native proteins has opened up the opportunity to elucidate the biological roles of a higher variety of glycans in their native state. As an example, our research group recently isolated a novel Endo-β-N-acetylglucosaminidase from Bifidobacterium longum subsp. infantis ATCC 15697 (EndoBI-1) that cleaves N-N'-diacetyl chitobiose moieties found in the N-linked glycan (N-glycan) core of high mannose, hybrid, and complex N-glycans. This enzyme is also active on native proteins, which enables native glycan isolation, a key advantage when evaluating their biological activities. Efficient, stable, and economically viable enzymatic release of N-glycans requires the selection of appropriate immobilization strategies. In this review, we discuss the state-of-the-art of various immobilization techniques (physical adsorption, covalent binding, aggregation, and entrapment) for glycosidases, as well as their potential substrates and matrices. © 2016 American Institute of Chemical Engineers Biotechnol. Prog., 33:104-112, 2017.

Indexed as

Bifidobacterium longumEnzymes, ImmobilizedGlycoside HydrolasesGlycosylationMannoseMannosyl-Glycoprotein Endo-beta-N-AcetylglucosaminidasePolysaccharidesProtein FoldingEnzymes, ImmobilizedGlycoside HydrolasesMannoseMannosyl-Glycoprotein Endo-beta-N-AcetylglucosaminidasePolysaccharidesglycosidasesimmobilizationN-glycansnutrition

Identifiers

PMID27718339
PMCPMC5559222
OpenAlexW2530161881

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.