Evidence map›Paper›PMID 27716807›Full record

ArticlePLoS genetics2016

Local Transcriptional Control of YUCCA Regulates Auxin Promoted Root-Growth Inhibition in Response to Aluminium Stress in Arabidopsis.

Guangchao Liu, Shan Gao, Huiyu Tian, Wenwen Wu, Hélène S Robert, Zhaojun Ding

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
21.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 125 citations in OpenAlex.

  1. Article
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  4. Review
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  8. Aluminium stress tolerance byPhysiology and molecular biology of plants : an international journal of functional plant biology · 2024
    Review
  9. Review
  10. Review
  11. Article
  12. Review
  13. The Role of Light-Regulated Auxin Signaling in Root Development.International journal of molecular sciences · 2023
    Review
  14. Identification and evolution analysis ofFrontiers in plant science · 2023
    Article
  15. Review
  16. Article
  17. Review
  18. Review
  19. Different Functions ofFrontiers in plant science · 2022
    Article
  20. A Berberine Bridge Enzyme-Like Protein,Frontiers in plant science · 2022
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Guangchao LiuThe Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, College of Life Science, Shandong University, Jinan, People's Republic of China.ORCID http://orcid.org/0000-0002-9078-8019
Shan GaoThe Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, College of Life Science, Shandong University, Jinan, People's Republic of China.
Huiyu TianThe Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, College of Life Science, Shandong University, Jinan, People's Republic of China.
Wenwen WuThe Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, College of Life Science, Shandong University, Jinan, People's Republic of China.
Hélène S RobertMendel Centre for Genomics and Proteomics of Plants Systems, CEITEC MU-Central European Institute of Technology, Masaryk University, Brno, Czech Republic.ORCID http://orcid.org/0000-0002-6610-836X
Zhaojun DingThe Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, College of Life Science, Shandong University, Jinan, People's Republic of China.
Shandong University · CNCentral European Institute of Technology · CZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Auxin is necessary for the inhibition of root growth induced by aluminium (Al) stress, however the molecular mechanism controlling this is largely unknown. Here, we report that YUCCA (YUC), which encodes flavin monooxygenase-like proteins, regulates local auxin biosynthesis in the root apex transition zone (TZ) in response to Al stress. Al stress up-regulates YUC3/5/7/8/9 in the root-apex TZ, which we show results in the accumulation of auxin in the root-apex TZ and root-growth inhibition during the Al stress response. These Al-dependent changes in the regulation of YUCs in the root-apex TZ and YUC-regulated root growth inhibition are dependent on ethylene signalling. Increasing or disruption of ethylene signalling caused either enhanced or reduced up-regulation, respectively, of YUCs in root-apex TZ in response to Al stress. In addition, ethylene enhanced root growth inhibition under Al stress was strongly alleviated in yuc mutants or by co-treatment with yucasin, an inhibitor of YUC activity, suggesting a downstream role of YUCs in this process. Moreover, ethylene-insensitive 3 (EIN3) is involved into the direct regulation of YUC9 transcription in this process. Furthermore, we demonstrated that PHYTOCHROME INTERACTING FACTOR4 (PIF4) functions as a transcriptional activator for YUC5/8/9. PIF4 promotes Al-inhibited primary root growth by regulating the local expression of YUCs and auxin signal in the root-apex TZ. The Al-induced expression of PIF4 in root TZ acts downstream of ethylene signalling. Taken together, our results highlight a regulatory cascade for YUCs-regulated local auxin biosynthesis in the root-apex TZ mediating root growth inhibition in response to Al stress.

Indexed as

AluminumArabidopsisArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsDNA-Binding ProteinsEthylenesGene Expression Regulation, PlantIndoleacetic AcidsNuclear ProteinsOxygenasesPlant RootsSignal TransductionStress, PhysiologicalTranscriptional ActivationTranscription FactorsAluminumArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsDNA-Binding ProteinsEIN3 protein, ArabidopsisethyleneEthylenesIndoleacetic AcidsNuclear ProteinsOxygenasesPIF4 protein, ArabidopsisTranscription FactorsYUC protein, Arabidopsis

Identifiers

PMID27716807
PMCPMC5065128
OpenAlexW2527905637

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.