Evidence map›Paper›PMID 27716307›Full record

ArticleMicrobial cell factories2016

Lambda Red recombinase-mediated integration of the high molecular weight DNA into the Escherichia coli chromosome.

Mario Juhas, James W Ajioka

Open access · goldAbstract read
In one paragraph

Article in Microbial cell factories, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. AJournal of bacteriology · 2024
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  7. Plasmid-free cheater cells commonly evolve during laboratory growth.Applied and environmental microbiology · 2024
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  8. AbioRxiv : the preprint server for biology · 2024
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  9. Recent advances in genome-scale engineering inEngineering microbiology · 2024
    Review
  10. Mobile and Self-Sustained Data Storage in an Extremophile Genomic DNA.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2023
    Article
  11. Article
  12. YbdO Promotes the Pathogenicity ofInternational journal of molecular sciences · 2022
    Article
  13. Article
  14. Rcs phosphorelay affects the sensitivity ofFrontiers in microbiology · 2022
    Article
  15. Article
  16. Article
  17. YbfA Regulates the Sensitivity ofFrontiers in microbiology · 2021
    Article
  18. EngineeredExperimental and therapeutic medicine · 2020
    Review
  19. Article
  20. The Effects of Lactose Induction on a Plasmid-FreeBioengineering (Basel, Switzerland) · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Mario JuhasDepartment of Pathology, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QP, UK. mj417@cam.ac.uk.
James W AjiokaDepartment of Pathology, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QP, UK.
University of Cambridge · GB

Funding

Biotechnology and Biological Sciences Research Council BB/L014130/1
6 · The paper itself

Abstract

backgroundEscherichia coli K-12 is a frequently used host for a number of synthetic biology and biotechnology applications and chassis for the development of the minimal cell factories. Novel approaches for integrating high molecular weight DNA into the E. coli chromosome would therefore greatly facilitate engineering efforts in this bacterium.

resultsWe developed a reliable and flexible lambda Red recombinase-based system, which utilizes overlapping DNA fragments for integration of the high molecular weight DNA into the E. coli chromosome. Our chromosomal integration strategy can be used to integrate high molecular weight DNA of variable length into any non-essential locus in the E. coli chromosome. Using this approach we integrated 15 kb DNA encoding sucrose catabolism and lactose metabolism and transport operons into the fliK locus of the flagellar region 3b in the E. coli K12 MG1655 chromosome. Furthermore, with this system we integrated 50 kb of Bacillus subtilis 168 DNA into two target sites in the E. coli K12 MG1655 chromosome. The chromosomal integrations into the fliK locus occurred with high efficiency, inhibited motility, and did not have a negative effect on the growth of E. coli.

conclusionsIn addition to the rational design of synthetic biology devices, our high molecular weight DNA chromosomal integration system will facilitate metabolic and genome-scale engineering of E. coli.

Indexed as

Recombination, GeneticBacillus subtilisChromosomes, BacterialDNA, BacterialEscherichia coli K12LactoseMolecular WeightRecombinasesSucroseSynthetic BiologyDNA, BacterialLactoseRecombinasesSucroseChromosomal integrationEscherichia coliHigh molecular weight DNALambda Red recombineeringSynthetic biology

Identifiers

PMID27716307
PMCPMC5050610
OpenAlexW2528668739

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.