Evidence map›Paper›PMID 27715490›Full record

ReviewRNA biology2016

Post-transcriptional mending of gene sequences: Looking under the hood of mitochondrial gene expression in diplonemids.

Matus Valach, Sandrine Moreira, Drahomíra Faktorová, Julius Lukeš, Gertraud Burger

Open access · bronzeAbstract readReview
In one paragraph

Review in RNA biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

  1. Biochemistry of Diplonemids.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  2. Article
  3. The complete mitochondrial genome ofFrontiers in microbiology · 2022
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Matus Valacha Department of Biochemistry and Robert-Cedergren , Center for Bioinformatics and Genomics, Université de Montréal , Montreal , Canada.
Sandrine Moreiraa Department of Biochemistry and Robert-Cedergren , Center for Bioinformatics and Genomics, Université de Montréal , Montreal , Canada.
Drahomíra Faktorováb Institute of Parasitology, Biology Center and Faculty of Sciences, University of South Bohemia , České Budějovice , Czech Republic.
Julius Lukešb Institute of Parasitology, Biology Center and Faculty of Sciences, University of South Bohemia , České Budějovice , Czech Republic.
Gertraud Burgera Department of Biochemistry and Robert-Cedergren , Center for Bioinformatics and Genomics, Université de Montréal , Montreal , Canada.
Université de Montréal · CACanadian Institute for Advanced Research · CAUniversity of South Bohemia in České Budějovice · CZ

Funding

CIHR MOP-79309
6 · The paper itself

Abstract

The instructions to make proteins and structural RNAs are laid down in gene sequences. Yet, in certain instances, these primary instructions need to be modified considerably during gene expression, most often at the transcript level. Here we review a case of massive post-transcriptional revisions via trans-splicing and RNA editing, a phenomenon occurring in mitochondria of a recently recognized protist group, the diplonemids. As of now, the various post-transcriptional steps have been cataloged in detail, but how these processes function is still unknown. Since genetic manipulation techniques such as gene replacement and RNA interference have not yet been established for these organisms, alternative strategies have to be deployed. Here, we discuss the experimental and bioinformatics approaches that promise to unravel the molecular machineries of trans-splicing and RNA editing in Diplonema mitochondria.

Indexed as

Base SequenceEuglenozoaGene Expression RegulationMitochondriaMitochondrial ProteinsProtozoan ProteinsRNA EditingRNA Processing, Post-TranscriptionalRNA, TransferMitochondrial ProteinsProtozoan ProteinsRNA, TransferCryptic genesdiplonemidsgene fragmentationmultipartite mtDNARNA editingtrans-splicing

Identifiers

PMID27715490
PMCPMC5207376
OpenAlexW2528305148

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.