Evidence map›Paper›PMID 27714790›Full record

ArticleFEBS letters2016

TeloPCR-seq: a high-throughput sequencing approach for telomeres.

Henrietta W Bennett, Na Liu, Yan Hu, Megan C King

Open access · greenAbstract readLetter
In one paragraph

Article in FEBS letters, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.8field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Henrietta W BennettDepartment of Cell Biology, Yale School of Medicine, New Haven, CT, USA.
Na LiuDepartment of Cell Biology, Yale School of Medicine, New Haven, CT, USA.
Yan HuDepartment of Cell Biology, Yale School of Medicine, New Haven, CT, USA.
Megan C KingDepartment of Cell Biology, Yale School of Medicine, New Haven, CT, USA.
Yale University · USYale Cancer Center · US

Funding

The role of nuclear architecture in adaptationDP2OD008429 · OD · YALE UNIVERSITY · PI KING, MEGAN C · 2011 to 2011
$2.5M
Genomic Regulation at the Nuclear PeripheryR21HG006742 · NHGRI · YALE UNIVERSITY · PI KING, MEGAN C, LUSK, CHARLES PATRICK · 2013 to 2014
$458k
NHGRI NIH HHS R21 HG006742NIH HHS DP2 OD008429
6 · The paper itself

Abstract

We have developed a high-throughput sequencing approach that enables us to determine terminal telomere sequences from tens of thousands of individual Schizosaccharomyces pombe telomeres. This method provides unprecedented coverage of telomeric sequence complexity in fission yeast. S. pombe telomeres are composed of modular degenerate repeats that can be explained by variation in usage of the TER1 RNA template during reverse transcription. Taking advantage of this deep sequencing approach, we find that 'like' repeat modules are highly correlated within individual telomeres. Moreover, repeat module preference varies with telomere length, suggesting that existing repeats promote the incorporation of like repeats and/or that specific conformations of the telomerase holoenzyme efficiently and/or processively add repeats of like nature. After the loss of telomerase activity, this sequencing and analysis pipeline defines a population of telomeres with altered sequence content. This approach will be adaptable to study telomeric repeats in other organisms and also to interrogate repetitive sequences throughout the genome that are inaccessible to other sequencing methods.

Indexed as

Base SequenceHigh-Throughput Nucleotide SequencingPolymerase Chain ReactionRepetitive Sequences, Nucleic AcidSchizosaccharomycesTelomeraseTelomereTelomerasehigh-throughput sequencingtelomerasetelomere

Identifiers

PMID27714790
PMCPMC5561429
OpenAlexW2529485821

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.