Evidence map›Paper›PMID 27714454›Full record

ArticlePlanta2017

Plant-specific 4/1 polypeptide interacts with an endoplasmic reticulum protein related to human BAP31.

Anna V Pankratenko, Anastasia K Atabekova, Ekaterina A Lazareva, Viktoriia E Baksheeva, Oxana A Zhironkina, Evgeni Yu Zernii, Robert A Owens, Andrey G Solovyev, Sergey Y Morozov

Abstract read
PubMed Publisher
In one paragraph

Article in Planta, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
2.7field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Anna V PankratenkoDepartment of Virology, Biological Faculty, Moscow State University, Moscow, 119992, Russia.
Anastasia K AtabekovaDepartment of Virology, Biological Faculty, Moscow State University, Moscow, 119992, Russia.
Ekaterina A LazarevaDepartment of Virology, Biological Faculty, Moscow State University, Moscow, 119992, Russia.
Viktoriia E BaksheevaBelozersky Institute of Physico-Chemical Biology, Moscow State University, Moscow, 119992, Russia.
Oxana A ZhironkinaBelozersky Institute of Physico-Chemical Biology, Moscow State University, Moscow, 119992, Russia.
Evgeni Yu ZerniiBelozersky Institute of Physico-Chemical Biology, Moscow State University, Moscow, 119992, Russia.
Robert A OwensMolecular Plant Pathology Laboratory, USDA-ARS, Beltsville, MD, 20705, USA.
Andrey G SolovyevBelozersky Institute of Physico-Chemical Biology, Moscow State University, Moscow, 119992, Russia.
Sergey Y MorozovDepartment of Virology, Biological Faculty, Moscow State University, Moscow, 119992, Russia. morozov@genebee.msu.su.
Lomonosov Moscow State University · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

MAIN

conclusionThe plant-specific 4/1 protein interacts, both in yeast two-hybrid system and in vitro, and co-localizes in plant cells with plant BAP-like protein, the orthologue of human protein BAP31. In yeast two-hybrid system, we identified a number of Nicotiana benthamiana protein interactors of Nt-4/1, the protein known to affect systemic transport of potato spindle tuber viroid. For one of these interactors, an orthologue of human B-cell receptor-associated protein 31 (BAP31) termed plant BAP-like protein (PBL), the ability to interact with Nt-4/1 was studied in greater detail. Analyses of purified proteins expressed in bacterial cells carried out in vitro with the surface plasmon resonance (SPR) spectroscopy revealed that the N. tabacum PBL (NtPBL) was able to interact with Nt-4/1 with high-affinity, and that their complex can form at physiologically relevant concentrations of both proteins. Subcellular localization studies of 4/1-GFP and NtPBL-mRFP transiently co-expressed in plant cells revealed the co-localization of the two fusion proteins in endoplasmic reticulum-associated bodies, suggesting their interaction in vivo. The N-terminal region of the Nt-4/1 protein was found to be required for the specific subcellular targeting of the protein, presumably due to a predicted amphipathic helix mediating association of the Nt-4/1 protein with cell membranes. Additionally, this region was found to contain a trans-activator domain responsible for the Nt-4/1 ability to activate transcription of a reporter gene in yeast.

Indexed as

Sequence Homology, Amino AcidAmino Acid SequenceCell MembraneEndoplasmic ReticulumHumansKineticsMembrane ProteinsNicotianaPeptidesPlant EpidermisPlant ProteinsProtein BindingRecombinant Fusion ProteinsSpecies SpecificitySubcellular FractionsSurface Plasmon ResonanceBCAP31 protein, humanMembrane ProteinsPeptidesPlant ProteinsRecombinant Fusion ProteinsBAP31Endoplasmic reticulumPlant protein 4/1Surface plasmon resonanceTransient protein expressionYeast two-hybrid system

Identifiers

PMID27714454
OpenAlexW2527881524

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.