Evidence map›Paper›PMID 27713409›Full record

ArticleNature communications2016

Evolutionary interplay between sister cytochrome P450 genes shapes plasticity in plant metabolism.

Zhenhua Liu, Raquel Tavares, Evan S Forsythe, François André, Raphaël Lugan, Gabriella Jonasson, Stéphanie Boutet-Mercey, Takayuki Tohge, Mark A Beilstein, Danièle Werck-Reichhart and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 72 citations in OpenAlex.

  1. Article
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  5. Article
  6. Plant terrestrialization: an environmental pull on the evolution of multi-sourced streptophyte phenolics.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
  7. Understanding metabolic diversification in plants: branchpoints in the evolution of specialized metabolism.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
  8. Cytochromes P450 evolution in the plant terrestrialization context.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
  9. Current and future perspectives for enhancing our understanding of the evolution of plant metabolism.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Article
  10. Article
  11. Article
  12. Article
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  14. Responses of flavonoids to solar UV radiation and gradual soil drying in two Medicago truncatula accessions.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2023
    Article
  15. Review
  16. Article
  17. Review
  18. Review
  19. Plants (Basel, Switzerland) · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Zhenhua LiuInstitute of Plant Molecular Biology, CNRS, University of Strasbourg, 12 rue du Général Zimmer, Strasbourg 67084 France.
Raquel TavaresUniversité Lyon 1, CNRS, UMR 5558, Laboratoire de Biométrie et Biologie Évolutive, 16 rue Raphael Dubois, 69622 Villeurbanne Cedex, France.
Evan S ForsytheSchool of Plant Sciences, University of Arizona, Tucson, Arizona 85721, USA.
François AndréiBiTec-S/SB2SM, UMR 9198 CNRS, University Paris Sud, CEA Saclay, 91191 Gif-sur-Yvette, France.
Raphaël LuganInstitute of Plant Molecular Biology, CNRS, University of Strasbourg, 12 rue du Général Zimmer, Strasbourg 67084 France.
Gabriella JonassoniBiTec-S/SB2SM, UMR 9198 CNRS, University Paris Sud, CEA Saclay, 91191 Gif-sur-Yvette, France.
Stéphanie Boutet-MerceyInstitut Jean-Pierre Bourgin, UMR 1318 INRA-AgroParisTech, Saclay Plant Sciences RD10, 78026 Versailles, France.
Takayuki TohgeMax-Planck-Institute of Molecular Plant Physiology, Department of Molecular Physiology, 14476 Potsdam-Golm, Germany.
Mark A BeilsteinSchool of Plant Sciences, University of Arizona, Tucson, Arizona 85721, USA.
Danièle Werck-ReichhartInstitute of Plant Molecular Biology, CNRS, University of Strasbourg, 12 rue du Général Zimmer, Strasbourg 67084 France.
Hugues RenaultInstitute of Plant Molecular Biology, CNRS, University of Strasbourg, 12 rue du Général Zimmer, Strasbourg 67084 France.ORCID 0000-0002-0871-9912
Centre National de la Recherche Scientifique · FRUniversity of Arizona · USAgroParisTech · FRMax Planck Institute of Molecular Plant Physiology · DEUniversité Claude Bernard Lyon 1 · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Expansion of the cytochrome P450 gene family is often proposed to have a critical role in the evolution of metabolic complexity, in particular in microorganisms, insects and plants. However, the molecular mechanisms underlying the evolution of this complexity are poorly understood. Here we describe the evolutionary history of a plant P450 retrogene, which emerged and underwent fixation in the common ancestor of Brassicales, before undergoing tandem duplication in the ancestor of Brassicaceae. Duplication leads first to gain of dual functions in one of the copies. Both sister genes are retained through subsequent speciation but eventually return to a single copy in two of three diverging lineages. In the lineage in which both copies are maintained, the ancestral functions are split between paralogs and a novel function arises in the copy under relaxed selection. Our work illustrates how retrotransposition and gene duplication can favour the emergence of novel metabolic functions.

Indexed as

Evolution, MolecularArabidopsisArabidopsis ProteinsCytochrome P-450 Enzyme SystemFabaceaeGene DuplicationGenes, PlantGenetic VariationRetroelementsTurneraArabidopsis ProteinsCytochrome P-450 Enzyme SystemRetroelements

Identifiers

PMID27713409
PMCPMC5059761
OpenAlexW2527841008

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.