Evidence map›Paper›PMID 27713405›Full record

ArticleNature communications2016

Molecular analysis of aggressive renal cell carcinoma with unclassified histology reveals distinct subsets.

Ying-Bei Chen, Jianing Xu, Anders Jacobsen Skanderup, Yiyu Dong, A Rose Brannon, Lu Wang, Helen H Won, Patricia I Wang, Gouri J Nanjangud, Achim A Jungbluth and 14 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 102 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
102citing papers in PubMed, 4 pooled it
12.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

102 citing papers in PubMed, 4 syntheses or guidelines pooled it, 176 citations in OpenAlex.

  1. Pooled it
  2. New developments in existing WHO entities and evolving molecular concepts: The Genitourinary Pathology Society (GUPS) update on renal neoplasia.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2021
    Guideline
  3. Novel, emerging and provisional renal entities: The Genitourinary Pathology Society (GUPS) update on renal neoplasia.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2021
    Guideline
  4. Guideline
  5. Trial
  6. Trial
  7. Phase II Trial of Cabozantinib Plus Nivolumab in Patients With Non-Clear-Cell Renal Cell Carcinoma and Genomic Correlates.Journal of clinical oncology : official journal of the American Society of Clinical Oncology · 2022
    Trial
  8. Trial
  9. "Renal cell carcinoma, not otherwise specified" is not a sufficient diagnostic classification.Virchows Archiv : an international journal of pathology · 2026
    Article
  10. Review
  11. Integrative Clinical and Molecular Evaluation of Renal Cell Carcinoma with Merlin Protein Deficiency and Biallelic Loss of NF2.Clinical cancer research : an official journal of the American Association for Cancer Research · 2026
    Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. DNA Methylation-Based Classification of Kidney Neoplasms.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2025
    Article
  19. Article
  20. Article

42 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 1 institution in 1 country.

Ying-Bei ChenDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA.ORCID 0000-0001-5207-3648
Jianing XuHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA.
Anders Jacobsen SkanderupComputational Biology Program, Sloan Kettering Institute for Cancer Research, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Yiyu DongHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA.ORCID 0000-0002-5391-4936
A Rose BrannonDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA.
Lu WangDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA.
Helen H WonDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA.
Patricia I WangHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA.
Gouri J NanjangudMolecular Cytogenetics Laboratory, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA.ORCID 0000-0002-8547-1957
Achim A JungbluthDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA.
Wei LiCell Biology Program, Sloan Kettering Institute for Cancer Research, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA.
Virginia OjedaCell Biology Program, Sloan Kettering Institute for Cancer Research, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA.
A Ari HakimiDepartment of Surgery, Urology Service, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA.
Martin H VossDepartment of Medicine, Genitourinary Oncology Service, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA.
Nikolaus SchultzComputational Biology Program, Sloan Kettering Institute for Cancer Research, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Robert J MotzerDepartment of Medicine, Genitourinary Oncology Service, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA.
Paul RussoDepartment of Surgery, Urology Service, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA.
Emily H ChengDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA.
Filippo G GiancottiCell Biology Program, Sloan Kettering Institute for Cancer Research, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA.
William LeeComputational Biology Program, Sloan Kettering Institute for Cancer Research, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Michael F BergerDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA.
Satish K TickooDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA.
Victor E ReuterDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA.
James J HsiehHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA.ORCID 0000-0003-3595-0551
Memorial Sloan Kettering Cancer Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
Mechanisms governing metastatic dormancy and reactivationR35CA197566 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI GIANCOTTI, FILIPPO G · 2016 to 2022
$6.7M
Mechanism of Merlin-mediated contact inhibition and tumor suppression.R01CA152975 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI GIANCOTTI, FILIPPO G · 2010 to 2014
$2.5M
Translational Research in Oncology Training ProgramT32CA160001 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI SAWYERS, CHARLES L. · 2011 to 2020
$2.0M
NCI NIH HHS P30 CA008748NCI NIH HHS R01 CA152975NCI NIH HHS R35 CA197566NCI NIH HHS T32 CA160001
6 · The paper itself

Abstract

Renal cell carcinomas with unclassified histology (uRCC) constitute a significant portion of aggressive non-clear cell renal cell carcinomas that have no standard therapy. The oncogenic drivers in these tumours are unknown. Here we perform a molecular analysis of 62 high-grade primary uRCC, incorporating targeted cancer gene sequencing, RNA sequencing, single-nucleotide polymorphism array, fluorescence in situ hybridization, immunohistochemistry and cell-based assays. We identify recurrent somatic mutations in 29 genes, including NF2 (18%), SETD2 (18%), BAP1 (13%), KMT2C (10%) and MTOR (8%). Integrated analysis reveals a subset of 26% uRCC characterized by NF2 loss, dysregulated Hippo-YAP pathway and worse survival, whereas 21% uRCC with mutations of MTOR, TSC1, TSC2 or PTEN and hyperactive mTORC1 signalling are associated with better clinical outcome. FH deficiency (6%), chromatin/DNA damage regulator mutations (21%) and ALK translocation (2%) distinguish additional cases. Altogether, this study reveals distinct molecular subsets for 76% of our uRCC cohort, which could have diagnostic and therapeutic implications.

Indexed as

Carcinoma, Renal CellCell Line, TumorDNA DamageHEK293 CellsHistone-Lysine N-MethyltransferaseHumansIn Situ Hybridization, FluorescenceKidney NeoplasmsNeoplasm ProteinsNeurofibromatosis 2Polymorphism, Single NucleotideSignal TransductionTOR Serine-Threonine KinasesTumor Suppressor ProteinsUbiquitin ThiolesteraseBAP1 protein, humanHistone-Lysine N-MethyltransferaseMTOR protein, humanNeoplasm ProteinsSETD2 protein, humanTOR Serine-Threonine KinasesTumor Suppressor ProteinsUbiquitin Thiolesterase

Identifiers

PMID27713405
PMCPMC5059781
OpenAlexW2529393194

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.