Evidence map›Paper›PMID 27711197›Full record

ArticlePLoS genetics2016

A Multistate Toggle Switch Defines Fungal Cell Fates and Is Regulated by Synergistic Genetic Cues.

Matthew Z Anderson, Allison M Porman, Na Wang, Eugenio Mancera, Denis Huang, Christina A Cuomo, Richard J Bennett

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. The Roles of Chromatin Accessibility in Regulating theJournal of fungi (Basel, Switzerland) · 2021
    Review
  9. Parasexuality ofFrontiers in cellular and infection microbiology · 2021
    Review
  10. Article
  11. Article
  12. Article
  13. Genetic Modification of Closely RelatedFrontiers in microbiology · 2019
    Article
  14. Article
  15. Article
  16. Epigenetic control of pheromone MAPK signaling determines sexual fecundity inProceedings of the National Academy of Sciences of the United States of America · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Matthew Z AndersonDepartment of Microbiology and Immunology, Brown University, Providence, Rhode Island, United States of America.
Allison M PormanDepartment of Microbiology and Immunology, Brown University, Providence, Rhode Island, United States of America.
Na WangDepartment of Microbiology and Immunology, Brown University, Providence, Rhode Island, United States of America.
Eugenio ManceraDepartment of Microbiology and Immunology, University of California San Francisco, San Francisco, California, United States of America.
Denis HuangDepartment of Microbiology and Immunology, Brown University, Providence, Rhode Island, United States of America.ORCID http://orcid.org/0000-0001-8344-3605
Christina A CuomoBroad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.ORCID http://orcid.org/0000-0002-5778-960X
Richard J BennettDepartment of Microbiology and Immunology, Brown University, Providence, Rhode Island, United States of America.
Brown University · USBroad Institute · USUniversity of California, San Francisco · US

Funding

Viral Genomics: evolution, spread, and host interactionsU19AI110818 · NIAID · BROAD INSTITUTE, INC. · PI NEAFSEY, DANIEL E · 2014 to 2024
$66.5M
Transcriptional Regulation of C. albicans Cell Fate and Host InteractionsR01AI081704 · NIAID · BROWN UNIVERSITY · PI Richard John Bennett · 2010 to 2026
$6.4M
Genotypic plasticity and parasex in Candida albicansR21AI112363 · NIAID · BROWN UNIVERSITY · PI BENNETT, RICHARD JOHN · 2014 to 2015
$447k
Phenotypic Plasticity and Sexual Reproduction in Candida tropicalis PathogenesisF31DE022703 · NIDCR · BROWN UNIVERSITY · PI SWAIN, ALLISON MARLY PORMAN · 2012 to 2014
$63k
NIAID NIH HHS HHSN272200900018CNIAID NIH HHS R01 AI081704NIAID NIH HHS R21 AI112363NIAID NIH HHS U19 AI110818NIDCR NIH HHS F31 DE022703
6 · The paper itself

Abstract

Heritable epigenetic changes underlie the ability of cells to differentiate into distinct cell types. Here, we demonstrate that the fungal pathogen Candida tropicalis exhibits multipotency, undergoing stochastic and reversible switching between three cellular states. The three cell states exhibit unique cellular morphologies, growth rates, and global gene expression profiles. Genetic analysis identified six transcription factors that play key roles in regulating cell differentiation. In particular, we show that forced expression of Wor1 or Efg1 transcription factors can be used to manipulate transitions between all three cell states. A model for tristability is proposed in which Wor1 and Efg1 are self-activating but mutually antagonistic transcription factors, thereby forming a symmetrical self-activating toggle switch. We explicitly test this model and show that ectopic expression of WOR1 can induce white-to-hybrid-to-opaque switching, whereas ectopic expression of EFG1 drives switching in the opposite direction, from opaque-to-hybrid-to-white cell states. We also address the stability of induced cell states and demonstrate that stable differentiation events require ectopic gene expression in combination with chromatin-based cues. These studies therefore experimentally test a model of multistate stability and demonstrate that transcriptional circuits act synergistically with chromatin-based changes to drive cell state transitions. We also establish close mechanistic parallels between phenotypic switching in unicellular fungi and cell fate decisions during stem cell reprogramming.

Indexed as

Epigenesis, GeneticCandida albicansCandida tropicalisCell DifferentiationCell LineageChromatinDNA-Binding ProteinsFungal ProteinsGene Expression Regulation, DevelopmentalGene Expression Regulation, FungalGenes, SwitchTranscription FactorsChromatinDNA-Binding ProteinsEFG1 protein, Candida albicansFungal ProteinsTranscription Factors

Identifiers

PMID27711197
PMCPMC5053522
OpenAlexW2527740469

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.