Evidence map›Paper›PMID 27711153›Full record

ArticlePloS one2016

Fumarate Production by Torulopsis glabrata: Engineering Heterologous Fumarase Expression and Improving Acid Tolerance.

Xiulai Chen, Wei Song, Cong Gao, Wen Qin, Qiuling Luo, Jia Liu, Liming Liu

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Article
  3. The ornithine-urea cycle involves fumaric acid biosynthesis inSynthetic and systems biotechnology · 2023
    Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Xiulai ChenState Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, China.
Wei SongState Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, China.
Cong GaoState Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, China.
Wen QinState Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, China.
Qiuling LuoState Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, China.
Jia LiuState Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, China.
Liming LiuState Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, China.
Jiangnan University · CNState Key Laboratory of Food Science and Technology · CN

Funding

Daily Moderate Ethanol Ingestion Attenuates Postischemic Microvascular DysfunctioR01AA022108 · NIAAA · UNIVERSITY OF MISSOURI-COLUMBIA · PI KORTHUIS, RONALD JOHN · 2015 to 2019
$1.7M
NIAAA NIH HHS R01 AA022108
6 · The paper itself

Abstract

Fumarate is a well-known biomass building block compound. However, the poor catalytic efficiency of fumarase is one of the major factors preventing its widespread production. To address this issue, we selected residues 159HPND162 of fumarase from Rhizopus oryzae as targets for site-directed mutagenesis based on molecular docking analysis. Twelve mutants were generated and characterized in detail. Kinetic studies showed that the Km values of the P160A, P160T, P160H, N161E, and D162W mutants were decreased, whereas Km values of H159Y, H159V, H159S, N161R, N161F, D162K, and D162M mutants were increased. In addition, all mutants displayed decreased catalytic efficiency except for the P160A mutant, whose kcat/Km was increased by 33.2%. Moreover, by overexpressing the P160A mutant, the engineered strain T.G-PMS-P160A was able to produce 5.2 g/L fumarate. To further enhance fumarate production, the acid tolerance of T.G-PMS-P160A was improved by deleting ade12, a component of the purine nucleotide cycle, and the resulting strain T.G(△ade12)-PMS-P160A produced 9.2 g/L fumarate. The strategy generated in this study opens up new avenues for pathway optimization and efficient production of natural products.

Indexed as

Mutagenesis, Site-DirectedBinding SitesFumarate HydrataseFumaratesGene ExpressionHydrogen-Ion ConcentrationKineticsMolecular Docking SimulationMutationProtein ConformationRhizopusSaccharomycetalesTemperatureFumarate HydrataseFumarates

Identifiers

PMID27711153
PMCPMC5053504
OpenAlexW2528680380

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.