Evidence map›Paper›PMID 27711050›Full record

ArticleNature protocols2016

Preparing monodisperse macromolecular samples for successful biological small-angle X-ray and neutron-scattering experiments.

Cy M Jeffries, Melissa A Graewert, Clément E Blanchet, David B Langley, Andrew E Whitten, Dmitri I Svergun

Abstract read
In one paragraph

Article in Nature protocols, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed.

  1. Article
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  6. Preparing research samples for safe arrival at centers and facilities: recipes for successful experiments.Acta crystallographica. Section F, Structural biology communications · 2024
    Article
  7. Adaptable SEC-SAXS data collection for higher quality structure analysis in solution.Protein science : a publication of the Protein Society · 2024
    Article
  8. Article
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  16. Review
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  18. Article
  19. Structural, Thermodynamic and Enzymatic Characterization ofInternational journal of molecular sciences · 2022
    Article
  20. Article

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Cy M JeffriesEuropean Molecular Biology Laboratory (EMBL) Hamburg Outstation, DESY, Hamburg, Germany.ORCID http://orcid.org/0000-0002-8718-7343
Melissa A GraewertEuropean Molecular Biology Laboratory (EMBL) Hamburg Outstation, DESY, Hamburg, Germany.
Clément E BlanchetEuropean Molecular Biology Laboratory (EMBL) Hamburg Outstation, DESY, Hamburg, Germany.
David B LangleyVictor Chang Cardiac Research Institute, Darlinghurst, New South Wales, Australia.
Dmitri I SvergunEuropean Molecular Biology Laboratory (EMBL) Hamburg Outstation, DESY, Hamburg, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Small-angle X-ray scattering (SAXS) and small-angle neutron scattering (SANS) are techniques used to extract structural parameters and determine the overall structures and shapes of biological macromolecules, complexes and assemblies in solution. The scattering intensities measured from a sample contain contributions from all atoms within the illuminated sample volume, including the solvent and buffer components, as well as the macromolecules of interest. To obtain structural information, it is essential to prepare an exactly matched solvent blank so that background scattering contributions can be accurately subtracted from the sample scattering to obtain the net scattering from the macromolecules in the sample. In addition, sample heterogeneity caused by contaminants, aggregates, mismatched solvents, radiation damage or other factors can severely influence and complicate data analysis, so it is essential that the samples be pure and monodisperse for the duration of the experiment. This protocol outlines the basic physics of SAXS and SANS, and it reveals how the underlying conceptual principles of the techniques ultimately 'translate' into practical laboratory guidance for the production of samples of sufficiently high quality for scattering experiments. The procedure describes how to prepare and characterize protein and nucleic acid samples for both SAXS and SANS using gel electrophoresis, size-exclusion chromatography (SEC) and light scattering. Also included are procedures that are specific to X-rays (in-line SEC-SAXS) and neutrons, specifically preparing samples for contrast matching or variation experiments and deuterium labeling of proteins.

Indexed as

Scattering, Small AngleAnalytic Sample Preparation MethodsDNAModels, MolecularNeutron DiffractionNucleic Acid ConformationProtein ConformationProteinsDNAProteins

Identifiers

PMID27711050
PMCPMC5402874

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.