Evidence map›Paper›PMID 27708766›Full record

ArticleInterface focus2016

Hybrid vertex-midline modelling of elongated plant organs.

John A Fozard, Malcolm J Bennett, John R King, Oliver E Jensen

Abstract read
In one paragraph

Article in Interface focus, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Review
  2. Article
  3. Modeling Auxin Signaling in Roots: Auxin Computations.Cold Spring Harbor perspectives in biology · 2022
    Review
  4. A field theory for plant tropisms.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  5. Multiscale integration of environmental stimuli in plant tropism produces complex behaviors.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  6. Force networks, torque balance and Airy stress in the planar vertex model of a confluent epithelium.Proceedings. Mathematical, physical, and engineering sciences · 2020
    Article
  7. The role of topology and mechanics in uniaxially growing cell networks.Proceedings. Mathematical, physical, and engineering sciences · 2020
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

John A FozardCentre for Plant Integrative Biology, School of Biosciences , University of Nottingham , Sutton Bonington LE12 5RD , UK.ORCID 0000-0001-9181-8083
Malcolm J BennettCentre for Plant Integrative Biology, School of Biosciences , University of Nottingham , Sutton Bonington LE12 5RD , UK.
John R KingCentre for Plant Integrative Biology, School of Biosciences, University of Nottingham, Sutton Bonington LE12 5RD, UK; School of Mathematical Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, UK.
Oliver E JensenSchool of Mathematics , University of Manchester , Oxford Road, Manchester M13 9PL , UK.ORCID 0000-0003-0172-6578

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We describe a method for the simulation of the growth of elongated plant organs, such as seedling roots. By combining a midline representation of the organ on a tissue scale and a vertex-based representation on the cell scale, we obtain a multiscale method, which is able to both simulate organ growth and incorporate cell-scale processes. Equations for the evolution of the midline are obtained, which depend on the cell-wall properties of individual cells through appropriate averages over the vertex-based representation. The evolution of the organ midline is used to deform the cellular-scale representation. This permits the investigation of the regulation of organ growth through the cell-scale transport of the plant hormone auxin. The utility of this method is demonstrated in simulating the early stages of the response of a root to gravity, using a vertex-based template acquired from confocal imaging. Asymmetries in the concentrations of auxin between the upper and lower sides of the root lead to bending of the root midline, reflecting a gravitropic response.

Indexed as

auxinbiomechanicsgravitropismgrowthmulticellularmultiscale

Identifiers

PMID27708766
PMCPMC4992745

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.