Evidence map›Paper›PMID 27708276›Full record

ArticleNature communications2016

A distinct holoenzyme organization for two-subunit pyruvate carboxylase.

Philip H Choi, Jeanyoung Jo, Yu-Cheng Lin, Min-Han Lin, Chi-Yuan Chou, Lars E P Dietrich, Liang Tong

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 20 citations in OpenAlex.

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  10. Structural and functional studies of pyruvate carboxylase regulation by cyclic di-AMP in lactic acid bacteria.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Philip H ChoiDepartment of Biological Sciences, Columbia University, New York, New York 10027, USA.
Jeanyoung JoDepartment of Biological Sciences, Columbia University, New York, New York 10027, USA.
Yu-Cheng LinDepartment of Biological Sciences, Columbia University, New York, New York 10027, USA.
Min-Han LinDepartment of Life Sciences and Institute of Genome Sciences, National Yang-Ming University, Taipei 112, Taiwan.
Chi-Yuan ChouDepartment of Life Sciences and Institute of Genome Sciences, National Yang-Ming University, Taipei 112, Taiwan.
Lars E P DietrichDepartment of Biological Sciences, Columbia University, New York, New York 10027, USA.
Liang TongDepartment of Biological Sciences, Columbia University, New York, New York 10027, USA.
Columbia University · USNational Yang Ming Chiao Tung University · TW

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007367 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI REINER, STEVEN L · 1985 to 2021
$25.1M
CELLULAR AND MOLECULAR FOUNDATIONS OF BIOMEDICAL SCIENCET32GM008798 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI PRYWES, RON M · 2001 to 2018
$6.3M
Integration of redox-balancing mechanisms in Pseudomonas aeruginosa biofilmsR01AI103369 · NIAID · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI DIETRICH, LARS · 2013 to 2022
$4.1M
Structural biology of enzymes in fatty acid metabolismR01DK067238 · NIDDK · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI TONG, LIANG · 2004 to 2012
$2.6M
Replacement of an aging X-ray diffraction system for protein crystallographyS10OD012018 · OD · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI TONG, LIANG · 2012 to 2012
$405k
NIAID NIH HHS R01 AI103369NIDDK NIH HHS R01 DK067238NIGMS NIH HHS T32 GM007367NIH HHS S10 OD012018
6 · The paper itself

Abstract

Pyruvate carboxylase (PC) has important roles in metabolism and is crucial for virulence for some pathogenic bacteria. PC contains biotin carboxylase (BC), carboxyltransferase (CT) and biotin carboxyl carrier protein (BCCP) components. It is a single-chain enzyme in eukaryotes and most bacteria, and functions as a 500 kD homo-tetramer. In contrast, PC is a two-subunit enzyme in a collection of Gram-negative bacteria, with the α subunit containing the BC and the β subunit the CT and BCCP domains, and it is believed that the holoenzyme has α

Indexed as

Acetyl-CoA CarboxylaseBacterial ProteinsBiotinCarbon-Nitrogen LigasesCrystallography, X-RayEscherichia coliFatty Acid Synthase, Type IIGene DeletionHoloenzymesMethylobacillusMutagenesisMutagenesis, Site-DirectedMutationPhenotypeProtein ConformationProtein DomainsAcetyl-CoA CarboxylaseBacterial ProteinsBiotinbiotin carboxylasebiotin carboxyl carrier proteinCarbon-Nitrogen LigasesFatty Acid Synthase, Type IIHoloenzymesPyruvate Carboxylase

Identifiers

PMID27708276
PMCPMC5059739
OpenAlexW2528040892

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.