Evidence map›Paper›PMID 27708261›Full record

ArticleNature communications2016

Genome sequence of the basal haplorrhine primate Tarsius syrichta reveals unusual insertions.

Jürgen Schmitz, Angela Noll, Carsten A Raabe, Gennady Churakov, Reinhard Voss, Martin Kiefmann, Timofey Rozhdestvensky, Jürgen Brosius, Robert Baertsch, Hiram Clawson and 6 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
11.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 43 citations in OpenAlex.

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  10. Functional genomics analysis reveals the evolutionary adaptation and demographic history of pygmy lorises.Proceedings of the National Academy of Sciences of the United States of America · 2022
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  17. Recently integratedMobile DNA · 2018
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  18. The value of new genome references.Experimental cell research · 2017
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  20. Hematopoietic Stem Cell Gene Therapy for Storage Disease: Current and New Indications.Molecular therapy : the journal of the American Society of Gene Therapy · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 2 countries.

Jürgen SchmitzInstitute of Experimental Pathology, University of Münster, 48149 Münster, Germany.
Angela NollInstitute of Experimental Pathology, University of Münster, 48149 Münster, Germany.
Carsten A RaabeInstitute of Experimental Pathology, University of Münster, 48149 Münster, Germany.
Gennady ChurakovInstitute of Experimental Pathology, University of Münster, 48149 Münster, Germany.
Reinhard VossIntegrated Functional Genomics, Interdisciplinary Center for Clinical Research, University of Münster, 48149 Münster, Germany.
Martin KiefmannInstitute of Experimental Pathology, University of Münster, 48149 Münster, Germany.
Timofey RozhdestvenskyInstitute of Experimental Pathology, University of Münster, 48149 Münster, Germany.
Jürgen BrosiusInstitute of Experimental Pathology, University of Münster, 48149 Münster, Germany.
Robert BaertschDepartment of Biomolecular Engineering, University of California, Santa Cruz, California 95064, USA.
Hiram ClawsonDepartment of Biomolecular Engineering, University of California, Santa Cruz, California 95064, USA.
Christian RoosPrimate Genetics Laboratory, German Primate Center, Leibniz Institute for Primate Research, 37077 Göttingen, Germany.ORCID 0000-0003-0190-4266
Aleksey ZiminInstitute for Physical Science and Technology, University of Maryland, 3300 Metzerott Rd, Adelphi, Maryland 20783, USA.
Patrick MinxMcDonnell Genome Institute, Washington University School of Medicine, St. Louis, Missouri 63108, USA.
Michael J MontagueMcDonnell Genome Institute, Washington University School of Medicine, St. Louis, Missouri 63108, USA.ORCID 0000-0003-0253-4404
Richard K WilsonMcDonnell Genome Institute, Washington University School of Medicine, St. Louis, Missouri 63108, USA.
Wesley C WarrenMcDonnell Genome Institute, Washington University School of Medicine, St. Louis, Missouri 63108, USA.
University of Münster · DEJames S. McDonnell Foundation · USUniversity of California, Santa Cruz · USGerman Primate Center · DEUniversity System of Maryland · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tarsiers are phylogenetically located between the most basal strepsirrhines and the most derived anthropoid primates. While they share morphological features with both groups, they also possess uncommon primate characteristics, rendering their evolutionary history somewhat obscure. To investigate the molecular basis of such attributes, we present here a new genome assembly of the Philippine tarsier (Tarsius syrichta), and provide extended analyses of the genome and detailed history of transposable element insertion events. We describe the silencing of Alu monomers on the lineage leading to anthropoids, and recognize an unexpected abundance of long terminal repeat-derived and LINE1-mobilized transposed elements (Tarsius interspersed elements; TINEs). For the first time in mammals, we identify a complete mitochondrial genome insertion within the nuclear genome, then reveal tarsier-specific, positive gene selection and posit population size changes over time. The genomic resources and analyses presented here will aid efforts to more fully understand the ancient characteristics of primate genomes.

Indexed as

Gene SilencingGenomeGenome, MitochondrialLong Interspersed Nucleotide ElementsAnimalsBrainCell NucleusDNA Transposable ElementsFemaleMarkov ChainsMicroRNAsMitochondriaMusclesPhylogenyRNA, Small NucleolarTarsiidaeDNA Transposable ElementsMicroRNAsRNA, Small Nucleolar

Identifiers

PMID27708261
PMCPMC5059674
OpenAlexW2527747613

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.