Evidence map›Paper›PMID 27708162›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

The Architecture of Trypanosoma brucei editosomes.

Suzanne M McDermott, Jie Luo, Jason Carnes, Jeff A Ranish, Kenneth Stuart

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Deep mutational scanning of the RNase III-like domain inFrontiers in cellular and infection microbiology · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Suzanne M McDermottCenter for Infectious Disease Research, Seattle, WA 98109.
Jie LuoInstitute for Systems Biology, Seattle, WA 98109.
Jason CarnesCenter for Infectious Disease Research, Seattle, WA 98109.
Jeff A RanishInstitute for Systems Biology, Seattle, WA 98109 jranish@systemsbiology.org ken.stuart@cidresearch.org.
Kenneth StuartCenter for Infectious Disease Research, Seattle, WA 98109; jranish@systemsbiology.org ken.stuart@cidresearch.org.
Center for Infectious Disease Research · USInstitute for Systems Biology · US

Funding

Quantitative Systems BiologyP50GM076547 · NIGMS · INSTITUTE FOR SYSTEMS BIOLOGY · PI DUDLEY, AIMEE M · 2006 to 2016
$30.6M
MITOCHONDRIAL DNA OF NORMAL AND MUTANT TRYPANOSOMESR01AI014102 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI KENNETH D STUART · 1985 to 2026
$20.9M
Mapping the Dynamic Architecture of the Human Mediator ComplexR21CA175849 · NCI · INSTITUTE FOR SYSTEMS BIOLOGY · PI RANISH, JEFFREY A, TAATJES, DYLAN J · 2013 to 2014
$385k
NCI NIH HHS R21 CA175849NIAID NIH HHS R01 AI014102NIGMS NIH HHS P50 GM076547
6 · The paper itself

Abstract

Uridine insertion and deletion RNA editing generates functional mitochondrial mRNAs in Trypanosoma brucei Editing is catalyzed by three distinct ∼20S editosomes that have a common set of 12 proteins, but are typified by mutually exclusive RNase III endonucleases with distinct cleavage specificities and unique partner proteins. Previous studies identified a network of protein-protein interactions among a subset of common editosome proteins, but interactions among the endonucleases and their partner proteins, and their interactions with common subunits were not identified. Here, chemical cross-linking and mass spectrometry, comparative structural modeling, and genetic and biochemical analyses were used to define the molecular architecture and subunit organization of purified editosomes. We identified intra- and interprotein cross-links for all editosome subunits that are fully consistent with editosome protein structures and previously identified interactions, which we validated by genetic and biochemical studies. The results were used to create a highly detailed map of editosome protein domain proximities, leading to identification of molecular interactions between subunits, insights into the functions of noncatalytic editosome proteins, and a global understanding of editosome architecture.

Indexed as

RNA EditingComputational BiologyEndonucleasesModels, MolecularMultiprotein ComplexesProtein BindingProtein ConformationProtein Interaction Domains and MotifsProtein Interaction MapsProteomeProteomicsProtozoan ProteinsReproducibility of ResultsRNA-Binding ProteinsRNA, ProtozoanTrypanosoma brucei bruceiEndonucleasesMultiprotein ComplexesProteomeProtozoan ProteinsRNA-Binding ProteinsRNA, Protozoancross-linkingeditosomeproteomicsRNA editingTrypanosoma brucei

Identifiers

PMID27708162
PMCPMC5081628
OpenAlexW2527707699

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.