Evidence map›Paper›PMID 27703454›Full record

ArticleFrontiers in immunology2016

Exome Sequencing Reveals Primary Immunodeficiencies in Children with Community-Acquired

Samira Asgari, Paul J McLaren, Jane Peake, Melanie Wong, Richard Wong, Istvan Bartha, Joshua R Francis, Katia Abarca, Kyra A Gelderman, Philipp Agyeman and 5 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it, 34 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. International survey on immunological diagnostics in children with sepsis.Intensive care medicine. Paediatric and neonatal · 2026
    Article
  4. Observational
  5. Article
  6. Review
  7. Article
  8. Cells · 2023
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Blacklisting variants common in private cohorts but not in public databases optimizes human exome analysis.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  17. Drug development in the era of precision medicine.Nature reviews. Drug discovery · 2018
    Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 12 institutions in 5 countries.

Samira AsgariGlobal Health Institute, School of Life Sciences, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland; Swiss Institute of Bioinformatics, Lausanne, Switzerland.
Paul J McLarenNational HIV and Retrovirology Laboratory, Public Health Agency of Canada, Winnipeg, MB, Canada; Department of Medical Microbiology and Infectious Diseases, University of Manitoba, Winnipeg, MB, Canada.
Jane PeakeLady Cilento Children's Hospital , Brisbane, QLD , Australia.
Melanie WongChildren's Hospital Westmead , Sydney, NSW , Australia.
Richard WongPathology Queensland Central Laboratory, Royal Brisbane and Women's Hospital , Brisbane, QLD , Australia.
Istvan BarthaGlobal Health Institute, School of Life Sciences, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland; Swiss Institute of Bioinformatics, Lausanne, Switzerland.
Joshua R FrancisMenzies School of Health Research, Charles Darwin University, Darwin, NT, Australia; Royal Darwin Hospital, Darwin, NT, Australia.
Katia AbarcaDepartamento de Enfermedades Infecciosas e Inmunología Pediátrica, Escuela de Medicina, Pontificia Universidad Católica de Chile , Santiago , Chile.
Kyra A GeldermanSanquin Diagnostic Services , Amsterdam , Netherlands.
Philipp AgyemanDepartment of Pediatrics, Inselspital, Bern University Hospital, University of Bern , Bern , Switzerland.
Christoph AebiDepartment of Pediatrics, Inselspital, Bern University Hospital, University of Bern , Bern , Switzerland.
Christoph BergerUniversity Children's Hospital Zurich , Zurich , Switzerland.
Jacques FellayGlobal Health Institute, School of Life Sciences, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland; Swiss Institute of Bioinformatics, Lausanne, Switzerland.
Luregn J SchlapbachLady Cilento Children's Hospital, Brisbane, QLD, Australia; Department of Pediatrics, Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland; Paediatric Critical Care Research Group (PCCRG), Mater Research, University of Queensland, Brisbane, QLD, Australia.
Swiss Pediatric Sepsis Study
École Polytechnique Fédérale de Lausanne · CHQueensland Children’s Hospital · AUCharles Darwin University · AUChildren's Hospital at Westmead · AUPontificia Universidad Católica de Chile · CLRoyal Brisbane and Women's Hospital · AUSanquin · NLSIB Swiss Institute of Bioinformatics · CHUniversity Children's Hospital Zurich · CHUniversity Hospital of Bern · CHUniversity of Bern · CHUniversity of Manitoba · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

One out of three pediatric sepsis deaths in high income countries occur in previously healthy children. Primary immunodeficiencies (PIDs) have been postulated to underlie fulminant sepsis, but this concept remains to be confirmed in clinical practice.

Indexed as

bacteremiachildexome sequencingprimary immunodeficiencyPseudomonassepsis

Identifiers

PMID27703454
PMCPMC5028722
OpenAlexW2522406802

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.