Evidence map›Paper›PMID 27702777›Full record

ArticleMolecular biology and evolution2016

Loss and Gain of Human Acidic Mammalian Chitinase Activity by Nonsynonymous SNPs.

Kazuaki Okawa, Misa Ohno, Akinori Kashimura, Masahiro Kimura, Yuki Kobayashi, Masayoshi Sakaguchi, Yasusato Sugahara, Minori Kamaya, Yoshihiro Kino, Peter O Bauer and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular biology and evolution, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 47 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Kazuaki OkawaDepartment of Chemistry and Life Science, Kogakuin University, Hachioji, Tokyo, Japan.
Misa OhnoDepartment of Chemistry and Life Science, Kogakuin University, Hachioji, Tokyo, Japan.
Akinori KashimuraDepartment of Chemistry and Life Science, Kogakuin University, Hachioji, Tokyo, Japan.
Masahiro KimuraDepartment of Chemistry and Life Science, Kogakuin University, Hachioji, Tokyo, Japan.
Yuki KobayashiDepartment of Chemistry and Life Science, Kogakuin University, Hachioji, Tokyo, Japan.
Masayoshi SakaguchiDepartment of Chemistry and Life Science, Kogakuin University, Hachioji, Tokyo, Japan.
Yasusato SugaharaDepartment of Chemistry and Life Science, Kogakuin University, Hachioji, Tokyo, Japan.
Minori KamayaDepartment of Applied Chemistry, Kogakuin University, Hachioji, Tokyo, Japan.
Yoshihiro KinoDepartment of Bioinformatics and Molecular Neuropathology, Meiji Pharmaceutical University, Kiyose, Tokyo, Japan.
Peter O BauerDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL.
Fumitaka OyamaDepartment of Chemistry and Life Science, Kogakuin University, Hachioji, Tokyo, Japan f-oyama@cc.kogakuin.ac.jp.
Kogakuin University · JPMayo Clinic in Florida · USMeiji Pharmaceutical University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Acidic mammalian chitinase (AMCase) is implicated in asthma, allergic inflammation, and food processing. Little is known about genetic and evolutional regulation of chitinolytic activity of AMCase. Here, we relate human AMCase polymorphisms to the mouse AMCase, and show that the highly active variants encoded by nonsynonymous single-nucleotide polymorphisms (nsSNPs) are consistent with the mouse AMCase sequence. The chitinolytic activity of the recombinant human AMCase was significantly lower than that of the mouse counterpart. By creating mouse-human chimeric AMCase protein we found that the presence of the N-terminal region of human AMCase containing conserved active site residues reduced the enzymatic activity of the molecule. We were able to significantly increase the activity of human AMCase by amino acid substitutions encoded by nsSNPs (N45, D47, and R61) with those conserved in the mouse homologue (D45, N47, and M61). For abolition of the mouse AMCase activity, introduction of M61R mutation was sufficient. M61 is conserved in most of primates other than human and orangutan as well as in other mammals. Orangutan has I61 substitution, which also markedly reduced the activity of the mouse AMCase, indicating that the M61 is a crucial residue for the chitinolytic activity. Altogether, our data suggest that human AMCase has lost its chitinolytic activity by integration of nsSNPs during evolution and that the enzyme can be reactivated by introducing amino acids conserved in the mouse counterpart.

Indexed as

AnimalsAsthmaChitinasesHumansMiceMutation, MissensePolymorphism, Single NucleotideAMCase, mouseCHIA protein, humanChitinasesacidic mammalian chitinaseamino acid substitutionschitinolytic activitypseudogenereactivationsingle-nucleotide polymorphisms

Identifiers

PMID27702777
PMCPMC5100053
OpenAlexW2529584704

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.