Evidence map›Paper›PMID 27701859›Full record

ArticleJournal of the American Chemical Society2016

HIV-1 Capsid Function Is Regulated by Dynamics: Quantitative Atomic-Resolution Insights by Integrating Magic-Angle-Spinning NMR, QM/MM, and MD.

Huilan Zhang, Guangjin Hou, Manman Lu, Jinwoo Ahn, In-Ja L Byeon, Christopher J Langmead, Juan R Perilla, Ivan Hung, Peter L Gor'kov, Zhehong Gan and 5 more

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 48 citations in OpenAlex.

  1. Synthesis ofMagnetic resonance in chemistry : MRC · 2026
    Article
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  3. Simultaneous recoupling of chemical shift tensors of two nuclei by R-symmetry sequences.Journal of magnetic resonance (San Diego, Calif. : 1997) · 2023
    Article
  4. Review
  5. Atomic-resolution chemical characterization of (2x)72-kDa tryptophan synthase via four- and five-dimensionalProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
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  16. Review
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  18. Accurate BackboneChemphyschem : a European journal of chemical physics and physical chemistry · 2020
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 1 country.

Huilan ZhangDepartment of Chemistry and Biochemistry, University of Delaware , Newark, Delaware 19716, United States.
Guangjin HouDepartment of Chemistry and Biochemistry, University of Delaware , Newark, Delaware 19716, United States.
Manman LuDepartment of Chemistry and Biochemistry, University of Delaware , Newark, Delaware 19716, United States.
Jinwoo AhnPittsburgh Center for HIV Protein Interactions, University of Pittsburgh School of Medicine , 1051 Biomedical Science Tower 3, 3501 Fifth Avenue, Pittsburgh, Pennsylvania 15261, United States.
In-Ja L ByeonPittsburgh Center for HIV Protein Interactions, University of Pittsburgh School of Medicine , 1051 Biomedical Science Tower 3, 3501 Fifth Avenue, Pittsburgh, Pennsylvania 15261, United States.
Christopher J LangmeadComputer Science Department, Carnegie Mellon University , Gates Hillman Center, 5000 Forbes Avenue, Pittsburgh, Pennsylvania 15213, United States.
Juan R PerillaDepartment of Physics and Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign , Urbana, Illinois 61801, United States.
Ivan HungNational High Magnetic Field Laboratory, Florida State University , Tallahassee, Florida 32310, United States.
Peter L Gor'kovNational High Magnetic Field Laboratory, Florida State University , Tallahassee, Florida 32310, United States.
Zhehong GanNational High Magnetic Field Laboratory, Florida State University , Tallahassee, Florida 32310, United States.
William W BreyNational High Magnetic Field Laboratory, Florida State University , Tallahassee, Florida 32310, United States.
David A CaseDepartment of Chemistry and Chemical Biology, Rutgers University , 174 Frelinghuysen Road, Piscataway, New Jersey 08854-8087, United States.
Klaus SchultenDepartment of Physics and Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign , Urbana, Illinois 61801, United States.
Angela M GronenbornPittsburgh Center for HIV Protein Interactions, University of Pittsburgh School of Medicine , 1051 Biomedical Science Tower 3, 3501 Fifth Avenue, Pittsburgh, Pennsylvania 15261, United States.
Tatyana PolenovaDepartment of Chemistry and Biochemistry, University of Delaware , Newark, Delaware 19716, United States.
University of Pittsburgh · USFlorida State University · USUniversity of Delaware · USUniversity of Illinois Urbana-Champaign · USGates (United States) · USNational High Magnetic Field Laboratory · USRutgers, The State University of New Jersey · US

Funding

X-Ray Core P50GM082251 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI ENGELMAN, ALAN N. · 2007 to 2018
$48.1M
The Center for HIV RNA Studies (CRNA)P50GM103297 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI DAYIE, KWAKU · 2012 to 2016
$21.7M
WHOLE CELL SIMULATIONP41GM104601 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI TAJKHORSHID, EMAD · 2012 to 2021
$19.0M
Pilot Research Subproject ProgramP30GM110758 · NIGMS · UNIVERSITY OF DELAWARE · PI PATEL, SANDEEP · 2014 to 2018
$5.8M
COBRE on Membrane Protein Production and CharacterizationP30GM103519 · NIGMS · UNIVERSITY OF DELAWARE · PI LENHOFF, ABRAHAM M · 2012 to 2014
$3.3M
Supercomputing: Rutgers' Catalyst for Discovery at the Frontiers of MedicineS10OD012346 · OD · RBHS-NEW JERSEY MEDICAL SCHOOL · PI MICHELSON, LESLIE PAUL · 2015 to 2015
$1.7M
NIGMS NIH HHS P30 GM103519NIGMS NIH HHS P30 GM110758NIGMS NIH HHS P41 GM104601NIGMS NIH HHS P50 GM082251NIGMS NIH HHS P50 GM103297NIH HHS S10 OD012346
6 · The paper itself

Abstract

HIV-1 CA capsid protein possesses intrinsic conformational flexibility, which is essential for its assembly into conical capsids and interactions with host factors. CA is dynamic in the assembled capsid, and residues in functionally important regions of the protein undergo motions spanning many decades of time scales. Chemical shift anisotropy (CSA) tensors, recorded in magic-angle-spinning NMR experiments, provide direct residue-specific probes of motions on nano- to microsecond time scales. We combined NMR, MD, and density-functional-theory calculations, to gain quantitative understanding of internal backbone dynamics in CA assemblies, and we found that the dynamically averaged

Identifiers

PMID27701859
PMCPMC5380593
OpenAlexW2529826495

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.