Evidence map›Paper›PMID 27701729›Full record

ArticleBiopolymers2017

Optimization of a β-sheet-cap for long loop closure.

Jordan M Anderson, Alexander A Shcherbakov, Brandon L Kier, Jackson Kellock, Irene Shu, Aimee L Byrne, Lisa A Eidenschink, Niels H Andersen

Abstract read
In one paragraph

Article in Biopolymers, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Biological consequences of improving the structural stability of hairpins that have antimicrobial activity.Journal of peptide science : an official publication of the European Peptide Society · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Jordan M AndersonDepartment of Chemistry, University of Washington, Seattle, Washington.
Alexander A ShcherbakovDepartment of Chemistry, University of Washington, Seattle, Washington.
Brandon L KierDepartment of Chemistry, University of Washington, Seattle, Washington.
Jackson KellockDepartment of Chemistry, University of Washington, Seattle, Washington.
Irene ShuDepartment of Chemistry, University of Washington, Seattle, Washington.
Aimee L ByrneDepartment of Chemistry, University of Washington, Seattle, Washington.
Lisa A EidenschinkDepartment of Chemistry, University of Washington, Seattle, Washington.
Niels H AndersenDepartment of Chemistry, University of Washington, Seattle, Washington.

Funding

THERMODYNAMICS AND THE DESIGN OF STRUCTURED PEPTIDESR01GM059658 · NIGMS · UNIVERSITY OF WASHINGTON · PI ANDERSEN, NIELS HJORTH · 2000 to 2009
$1.9M
Exploring Protein Folding Landscapes by Circular PermutationR01GM099889 · NIGMS · UNIVERSITY OF WASHINGTON · PI ANDERSEN, NIELS HJORTH · 2012 to 2015
$1.0M
NIGMS NIH HHS R01 GM059658NIGMS NIH HHS R01 GM099889
6 · The paper itself

Abstract

Protein loops make up a large portion of the secondary structure in nature. But very little is known concerning loop closure dynamics and the effects of loop composition on fold stability. We have designed a small system with stable β-sheet structures, including features that allow us to probe these questions. Using paired Trp residues that form aromatic clusters on folding, we are able to stabilize two β-strands connected by varying loop lengths and composition (an example sequence: RWITVTI - loop - KKIRVWE). Using NMR and CD, both fold stability and folding dynamics can be investigated for these systems. With the 16 residue loop peptide (sequence: RWITVTI-(GGGGKK)

Indexed as

Amino Acid SequenceCircular DichroismMagnetic Resonance SpectroscopyMolecular Sequence DataPeptidesProtein FoldingProtein StabilityProtein Structure, SecondaryThermodynamicsPeptidesAryl Clusterbeta-Cappingbeta-hairpinlong loopspeptide designTrp/Trp

Identifiers

PMID27701729
PMCPMC7444092

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.