Evidence map›Paper›PMID 27700100›Full record

ArticleJournal of proteome research2017

Proteolysis by Granzyme B Enhances Presentation of Autoantigenic Peptidylarginine Deiminase 4 Epitopes in Rheumatoid Arthritis.

Erika Darrah, AeRyon Kim, Xi Zhang, Tatiana Boronina, Robert N Cole, Andrea Fava, Jon T Giles, Clifton O Bingham III, Michael J Chalmers, Patrick R Griffin and 2 more

Abstract read
In one paragraph

Article in Journal of proteome research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Erika DarrahDivision of Rheumatology, Johns Hopkins University School of Medicine , Baltimore, Maryland 21224, United States.
AeRyon KimDepartment of Pathology, Johns Hopkins University School of Medicine , Baltimore Maryland 21205, United States.
Xi ZhangDepartment of Molecular Therapeutics, The Scripps Research Institute , Jupiter, Florida 33458, United States.
Tatiana BoroninaDepartment of Biological Chemistry, Mass Spectrometry and Proteomics Facility, Johns Hopkins University School of Medicine , Baltimore Maryland 21205, United States.
Robert N ColeDepartment of Biological Chemistry, Mass Spectrometry and Proteomics Facility, Johns Hopkins University School of Medicine , Baltimore Maryland 21205, United States.
Andrea FavaDivision of Rheumatology, Johns Hopkins University School of Medicine , Baltimore, Maryland 21224, United States.
Jon T GilesDivision of Rheumatology, Columbia University, College of Physicians and Surgeons , New York, New York 10027, United States.
Clifton O Bingham IIIDivision of Rheumatology, Johns Hopkins University School of Medicine , Baltimore, Maryland 21224, United States.
Michael J ChalmersDepartment of Molecular Therapeutics, The Scripps Research Institute , Jupiter, Florida 33458, United States.
Patrick R GriffinDepartment of Molecular Therapeutics, The Scripps Research Institute , Jupiter, Florida 33458, United States.
Scheherazade Sadegh-NasseriDepartment of Pathology, Johns Hopkins University School of Medicine , Baltimore Maryland 21205, United States.
Antony RosenDivision of Rheumatology, Johns Hopkins University School of Medicine , Baltimore, Maryland 21224, United States.

Funding

UHTS Implementation(Florida)U54MH084512 · NIMH · SCRIPPS RESEARCH INSTITUTE, THE · PI ROUSH, WILLIAM R · 2008 to 2013
$89.2M
Institute for Clinical and Translational ResearchUL1TR001079 · NCATS · JOHNS HOPKINS UNIVERSITY · PI FORD, DANIEL ERNEST · 2013 to 2017
$60.1M
Phenotype-Specific Immune Responses in the Systemic VasculitidesP30AR053503 · NIAMS · JOHNS HOPKINS UNIVERSITY · PI ROSEN, ANTONY · 2006 to 2015
$6.4M
Role of DM in Generation of Immunodominant Epitope(s)R01AI063764 · NIAID · JOHNS HOPKINS UNIVERSITY · PI SADEGH-NASSERI, SCHEHERAZADE · 2006 to 2015
$3.6M
Development of H/D exchange technology for the study of large protein complexesR01GM084041 · NIGMS · SCRIPPS FLORIDA · PI GRIFFIN, PATRICK ROBERT · 2009 to 2012
$1.6M
Molecular Mechanisms of HLA-DO in Antigen ProcessingR21AI101987 · NIAID · JOHNS HOPKINS UNIVERSITY · PI SADEGH-NASSERI, SCHEHERAZADE · 2012 to 2013
$433k
NCATS NIH HHS UL1 TR001079NIAID NIH HHS R01 AI063764NIAID NIH HHS R21 AI101987NIAMS NIH HHS P30 AR053503NIGMS NIH HHS R01 GM084041NIMH NIH HHS U54 MH084512
6 · The paper itself

Abstract

Proteolysis of autoantigens can alter normal MHC class II antigen processing and has been implicated in the induction of autoimmune diseases. Many autoantigens are substrates for the protease granzyme B (GrB), but the mechanistic significance of this association is unknown. Peptidylarginine deiminase 4 (PAD4) is a frequent target of autoantibodies in patients with rheumatoid arthritis (RA) and a substrate for GrB. RA is strongly associated with specific MHC class II alleles, and elevated levels of GrB and PAD4 are found in the joints of RA patients, suggesting that GrB may alter the presentation of PAD4 by RA-associated class II alleles. In this study, complementary proteomic and immunologic approaches were utilized to define the effects of GrB cleavage on the structure, processing, and immunogenicity of PAD4. Hydrogen-deuterium exchange and a cell-free MHC class II antigen processing system revealed that proteolysis of PAD4 by GrB induced discrete structural changes in PAD4 that promoted enhanced presentation of several immunogenic peptides capable of stimulating PAD4-specific CD4+ T cells from patients with RA. This work demonstrates the existence of PAD4-specific T cells in patients with RA and supports a mechanistic role for GrB in enhancing the presentation of autoantigenic CD4+ T cell epitopes.

Indexed as

AgedAmino Acid SequenceAntigen PresentationArthritis, RheumatoidAutoantibodiesAutoantigensBinding SitesCase-Control StudiesCD4-Positive T-LymphocytesDeuterium Exchange MeasurementEpitopes, T-LymphocyteEscherichia coliFemaleGene ExpressionGranzymesHumansAutoantibodiesAutoantigensEpitopes, T-LymphocyteGranzymesGZMB protein, humanHydrolasesPADI4 protein, humanProtein-Arginine DeiminasesProtein-Arginine Deiminase Type 4Recombinant Proteinsantigen presentationantigen processingautoantigenautoimmunityepitopehydrogen−deuterium exchangemass spectrometrypeptidylarginine deiminaserheumatoid arthritisshared epitope

Identifiers

PMID27700100
PMCPMC5218978

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.