Evidence map›Paper›PMID 27699887›Full record

ArticleProteins2016

Three pairs of weak interactions precisely regulate the G-loop gate of Kir2.1 channel.

Junwei Li, Shaoying Xiao, Xiaoxiao Xie, Hui Zhou, Chunli Pang, Shanshan Li, Hailin Zhang, Diomedes E Logothetis, Yong Zhan, Hailong An

Abstract read
In one paragraph

Article in Proteins, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Junwei LiKey Laboratory of Molecular Biophysics, Hebei Province, Institute of Biophysics, School of Sciences, Hebei University of Technology, Tianjin, 300401, China.
Shaoying XiaoDepartment of Urban Planning, School of Architecture and Art Design, Hebei University of Technology, Tianjin, 300401, China.
Xiaoxiao XieKey Laboratory of Molecular Biophysics, Hebei Province, Institute of Biophysics, School of Sciences, Hebei University of Technology, Tianjin, 300401, China.
Hui ZhouDepartment of Mathematics and Physics, North China Electric Power University, Baoding, 071003, China.
Chunli PangKey Laboratory of Molecular Biophysics, Hebei Province, Institute of Biophysics, School of Sciences, Hebei University of Technology, Tianjin, 300401, China.
Shanshan LiDepartment of Mechatronics Engineering, Hebei University of Technology, Tianjin, 300130, China.
Hailin ZhangKey Laboratory of Neural and Vascular Biology, Ministry of Education, The Key Laboratory of Pharmacology and Toxicology for New Drug, Hebei Province, Department of Pharmacology, Hebei Medical University, Shijiazhuang, 050017, China.
Diomedes E LogothetisDepartment of Physiology and Biophysics, School of Medicine, Virginia Commonwealth University, Richmond, Virginia, 23298.
Yong ZhanKey Laboratory of Molecular Biophysics, Hebei Province, Institute of Biophysics, School of Sciences, Hebei University of Technology, Tianjin, 300401, China.
Hailong AnKey Laboratory of Molecular Biophysics, Hebei Province, Institute of Biophysics, School of Sciences, Hebei University of Technology, Tianjin, 300401, China.

Funding

Structural Determinants of PIP2 RegulationR01HL059949 · NHLBI · VIRGINIA COMMONWEALTH UNIVERSITY · PI Leigh Daniel Plant · 1998 to 2026
$11.6M
NHLBI NIH HHS R01 HL059949
6 · The paper itself

Abstract

Kir2.1 (also known as IRK1) plays key roles in regulation of resting membrane potential and cell excitability. To achieve its physiological roles, Kir2.1 performs a series of conformational transition, named as gating. However, the structural basis of gating is still obscure. Here, we combined site-directed mutation, two-electrode voltage clamp with molecular dynamics simulations and determined that H221 regulates the gating process of Kir2.1 by involving a weak interaction network. Our data show that the H221R mutant accelerates the rundown kinetics and decelerates the reactivation kinetics of Kir2.1. Compared with the WT channel, the H221R mutation strengthens the interaction between the CD- and G-loops (E303-R221) which stabilizes the close state of the G-loop gate and weakens the interactions between C-linker and CD-loop (R221-R189) and the adjacent G-loops (E303-R312) which destabilizes the open state of G-loop gate. Our data indicate that the three pairs of interactions (E303-H221, H221-R189 and E303-R312) precisely regulate the G-loop gate by controlling the conformation of G-loop. Proteins 2016; 84:1929-1937. © 2016 Wiley Periodicals, Inc.

Indexed as

Ion Channel GatingAnimalsChickensGene ExpressionG Protein-Coupled Inwardly-Rectifying Potassium ChannelsMembrane PotentialsMiceMolecular Dynamics SimulationMutagenesis, Site-DirectedMutationOocytesPatch-Clamp TechniquesPlasmidsPotassium Channels, Inwardly RectifyingProtein DomainsProtein Structure, SecondaryG Protein-Coupled Inwardly-Rectifying Potassium ChannelsKcnj6 protein, mouseKir2.1 channelKir2.2 channelPotassium Channels, Inwardly RectifyingRecombinant Proteinsgating kineticshomology modelKir channelmolecular dynamicstargeted molecular dynamicsweak interaction

Identifiers

PMID27699887
PMCPMC5317092

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.